Gene: Solyc01g087990.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc01g087990.3
- Transcript Identifier Solyc01g087990.3.1
- Gene Type Coding gene
- Location SL4.0ch01 : 75071941-75077635 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc01g087990.3.1
- uniprot A0A3Q7F370
- gene_id Solyc01g087990
Descriptions
- Description MADS-box transcription factor (AHRD V3.3 *** Q75V01_9ASPA)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G13790 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT3G57390 |
| GO:0060867 | ISO | PLAZA Integrative Orthology | fruit abscission | AT5G13790 |
| GO:0045487 | ISO | PLAZA Integrative Orthology | gibberellin catabolic process | AT5G13790 |
| GO:0060862 | ISO | PLAZA Integrative Orthology | negative regulation of floral organ abscission | AT5G13790 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT3G57390 |
| GO:0010629 | ISO | PLAZA Integrative Orthology | negative regulation of gene expression | AT5G13790 |
| GO:0048577 | ISO | PLAZA Integrative Orthology | negative regulation of short-day photoperiodism, flowering | AT3G57390 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G13790 |
| GO:0071365 | ISO | PLAZA Integrative Orthology | cellular response to auxin stimulus | AT5G13790 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT5G13790 |
| GO:0010227 | ISO | PLAZA Integrative Orthology | floral organ abscission | AT5G13790 |
| GO:0010047 | ISO | PLAZA Integrative Orthology | fruit dehiscence | AT5G13790 |
| GO:0045944 | IEA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0010262 | ISO | PLAZA Integrative Orthology | somatic embryogenesis | AT5G13790 |
| GO:2000692 | ISO | PLAZA Integrative Orthology | negative regulation of seed maturation | AT5G13790 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G57390 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT3G57390 |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT5G13790 |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT5G13790 |
| GO:0140110 | ISO | PLAZA Integrative Orthology | transcription regulator activity | AT5G13790 |
| GO:0046983 | IEA | GOA Database | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000977 | IEA | GOA Database | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000981 | IBA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0000978 | IBA | GOA Database | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G13790 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |