Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 4.7e-113 411.4 232 100.0
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 4.7e-113 411.4 232 100.0
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-111 406.0 232 98.3
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 4.8e-110 401.4 232 97.4
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-109 400.2 233 98.3
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-109 400.2 233 98.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 3.1e-109 398.7 232 97.4
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 3.1e-109 398.7 232 97.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 3.1e-109 398.7 232 96.1
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 9.1e-109 397.1 232 97.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-108 396.0 230 96.5
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.0e-108 396.0 232 96.6
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.0e-108 396.0 232 96.6
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.7e-108 395.6 232 95.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 6.5e-107 391.0 232 95.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.5e-106 389.8 232 95.3
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.5e-106 389.8 232 95.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.2e-106 388.3 232 95.3
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.1e-105 386.0 232 94.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.7e-105 385.6 232 93.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 2.3e-104 382.5 233 95.7
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.2e-96 354.8 232 87.5
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-93 347.1 232 88.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.9e-90 336.3 236 83.5
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.5e-90 335.9 233 80.7
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.5e-90 334.0 232 79.7
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 9.5e-90 334.0 232 79.7
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.2e-89 333.6 235 80.0
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.8e-89 332.4 232 83.2
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 3.6e-89 332.0 232 81.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 8.0e-89 330.9 232 81.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 1.8e-88 329.7 232 81.0
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.0e-88 328.9 232 81.5
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 8.9e-88 327.4 232 81.5
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.9e-88 327.4 232 80.2
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.2e-87 327.0 232 78.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.6e-87 325.9 233 80.7
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 3.4e-87 325.5 232 80.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 5.7e-87 324.7 232 81.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 9.8e-87 323.9 232 79.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.3e-86 323.6 232 79.7
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.9e-86 322.4 232 78.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.7e-86 322.0 232 79.7
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 3.7e-86 322.0 232 76.7
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.4e-86 321.2 234 80.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 6.4e-86 321.2 233 77.7
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.8e-85 319.7 247 73.7
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.8e-85 319.7 232 78.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.2e-85 318.9 232 78.0
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 78.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.4e-85 318.2 232 78.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 2.0e-84 316.2 232 78.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.7e-84 315.8 233 80.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.5e-84 315.5 233 78.5
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.5e-84 315.5 232 80.2
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 4.6e-84 315.1 232 78.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 79.3
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.0e-83 312.4 232 77.2
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 3.0e-83 312.4 234 76.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 3.9e-83 312.0 233 76.8
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 3.9e-83 312.0 233 76.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 6.6e-83 311.2 232 75.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 6.6e-83 311.2 232 77.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 8.6e-83 310.8 232 77.6
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.1e-82 310.5 244 75.8
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-82 309.7 234 79.5
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.9e-82 309.7 232 78.9
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.9e-82 309.7 233 76.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.3e-82 308.9 232 78.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 4.3e-82 308.5 234 79.1
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 4.3e-82 308.5 232 77.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 5.6e-82 308.1 232 77.6
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 5.6e-82 308.1 232 76.3
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.6e-82 308.1 235 78.7
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 5.6e-82 308.1 232 78.0
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 9.5e-82 307.4 232 77.6
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.2e-81 307.0 232 76.3
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.1e-81 306.2 232 76.3
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.6e-81 305.4 232 76.3
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.2e-81 304.7 235 78.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.2e-81 304.7 232 72.8
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 6.2e-81 304.7 235 77.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 8.0e-81 304.3 233 79.4
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 2.3e-80 302.8 232 74.6
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.3e-80 302.8 236 73.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 4.0e-80 302.0 235 74.9
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 4.0e-80 302.0 232 76.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 8.9e-80 300.8 232 75.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.4e-79 298.9 232 75.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.9e-78 295.8 252 67.1
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.4e-78 294.7 232 74.1
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 6.4e-78 294.7 233 76.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.4e-78 294.7 232 76.3
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.3e-78 294.3 233 68.7
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.1e-77 293.9 232 76.3
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.2e-77 292.4 232 69.4
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.1e-77 292.0 235 74.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.1e-77 292.0 232 74.6
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.1e-77 292.0 233 74.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.6e-76 290.0 232 73.7
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.6e-76 290.0 233 73.4
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.0e-76 289.7 232 75.4
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.5e-76 288.9 232 74.6
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.3e-75 287.0 234 74.4
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.3e-75 287.0 234 74.4
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.3e-75 286.2 234 68.4
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.3e-75 286.2 232 73.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 6.6e-75 284.6 232 65.9
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.9e-74 283.1 232 68.1
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.3e-74 281.2 286 58.0
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 9.5e-74 280.8 233 72.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.2e-73 280.4 239 72.8
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.1e-73 277.7 234 66.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 8.1e-73 277.7 237 71.7
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.1e-72 275.8 232 72.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.1e-72 275.8 232 66.4
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 8.9e-72 274.2 232 71.1
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.8e-71 271.6 232 66.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.7e-70 270.0 233 70.0
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.7e-70 268.9 236 67.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 4.9e-70 268.5 235 69.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 8.3e-70 267.7 228 71.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.1e-69 267.3 232 67.7
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-69 266.9 232 69.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.9e-69 266.5 219 76.3
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-67 260.4 232 69.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.7e-67 260.0 233 70.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.6e-67 257.7 232 69.4
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-66 255.4 232 69.0
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 5.6e-66 255.0 232 65.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 5.6e-66 255.0 232 69.4
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.3e-66 254.6 232 68.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.5e-63 246.9 234 67.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.0e-63 246.5 271 57.6
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 9.2e-61 237.7 232 65.5
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.1e-60 236.5 232 65.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 7.8e-60 234.6 234 63.2
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.3e-58 229.2 191 75.4
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.1e-53 214.2 237 59.5
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.4e-53 213.8 188 70.7
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.3e-51 207.2 161 76.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-51 206.8 232 59.9
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-50 203.8 188 69.1
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.8e-49 198.7 255 51.0
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.2e-46 189.9 121 80.2
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 6.4e-46 188.3 98 99.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.9e-45 186.8 236 55.1
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.1e-44 183.3 121 76.9
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.7e-44 183.0 156 72.4
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.7e-44 183.0 122 76.2
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.3e-43 179.9 243 51.9
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.0e-40 169.1 157 71.3
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.9e-40 168.3 113 77.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.0e-40 167.9 113 77.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.9e-39 164.5 113 76.1
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 6.4e-38 161.8 139 70.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 3.2e-37 159.5 123 71.5
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 4.2e-37 159.1 109 80.7
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 4.3e-34 149.1 98 84.7
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 5.6e-34 148.7 94 83.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-33 147.1 98 77.6
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.9e-26 123.6 77 79.2
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.3e-26 122.5 83 74.7
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 3.7e-25 119.4 181 50.8
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 7.6e-23 111.7 97 64.9
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 7.6e-23 111.7 232 40.1
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.0e-22 109.0 183 44.8
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.5e-21 106.7 78 71.8
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.9e-19 99.4 229 37.1
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.3e-18 96.3 75 72.0
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.5e-14 81.6 44 86.4
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-12 77.8 72 59.7
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 6.1e-12 75.5 56 66.1
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 5.7e-10 68.9 110 40.0
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-08 64.7 93 46.2
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-08 63.2 92 48.9
C07p36730 Brassica napus HOM05D046801 ORTHO05D100950 1.3e-06 57.8 42 73.8
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 1.3e-06 57.8 61 57.4


User provided reference genes

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