Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1335.5 696 100.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 0.0e+00 1301.2 697 97.7
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1291.6 696 97.1
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1286.9 697 96.7
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 0.0e+00 1286.9 697 96.7
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1257.7 697 94.4
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 0.0e+00 1229.2 696 91.7
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 0.0e+00 1167.9 698 87.5
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 0.0e+00 1165.2 696 87.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 0.0e+00 1157.9 697 87.1
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 0.0e+00 1157.9 697 87.2
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 0.0e+00 1147.5 697 86.2
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 0.0e+00 1077.0 704 81.1
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.5e-279 966.1 704 72.9
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 5.6e-263 911.0 705 69.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 8.5e-219 764.2 714 60.8
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 4.7e-217 758.4 715 59.6
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 3.3e-215 752.3 708 59.6
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.4e-213 746.1 712 58.6
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.2e-212 743.8 718 58.6
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 3.5e-212 742.3 714 60.2
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.2e-210 735.7 734 57.5
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 2.1e-209 733.0 703 60.6
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 8.0e-209 731.1 733 57.6
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.4e-208 730.3 716 58.4
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.0e-207 726.5 724 59.1
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.4e-207 725.3 708 59.5
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 7.5e-207 724.5 722 57.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 1.7e-206 723.4 713 57.9
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.8e-206 722.6 715 59.0
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 3.7e-206 722.2 709 59.0
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.8e-206 721.8 709 58.4
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 8.3e-206 721.1 711 58.6
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.8e-205 719.9 714 58.7
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 7.0e-205 718.0 728 58.1
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.6e-204 716.8 714 57.3
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.5e-204 715.7 709 58.7
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.3e-203 713.0 712 57.3
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 3.8e-203 712.2 713 57.5
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 3.8e-203 712.2 714 57.3
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.5e-202 710.3 710 56.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-202 710.3 708 58.6
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.5e-202 709.5 712 56.9
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 7.2e-202 708.0 699 57.4
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.6e-201 706.8 714 57.8
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.6e-201 706.8 714 57.8
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.1e-201 706.4 728 57.8
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 8.0e-201 704.5 718 58.1
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.3e-200 703.0 708 56.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.2e-200 701.8 703 58.6
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 5.2e-200 701.8 720 56.2
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.8e-200 701.4 696 57.9
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 8.3e-198 694.5 721 57.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 9.2e-197 691.0 743 55.3
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.7e-196 689.5 712 57.7
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.7e-196 689.5 706 56.9
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.7e-196 689.5 713 56.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 3.5e-196 689.1 706 56.7
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 5.9e-196 688.3 712 56.9
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.8e-196 688.0 714 56.0
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.3e-195 687.2 710 56.8
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.6e-195 684.9 708 57.1
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-194 683.7 712 55.3
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 7.3e-194 681.4 715 55.9
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.6e-193 680.2 713 56.4
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.6e-193 680.2 711 56.0
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.1e-193 679.9 714 56.0
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 2.8e-193 679.5 708 55.4
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 4.0e-192 675.6 714 56.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-192 675.2 708 56.6
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.5e-191 673.7 715 55.4
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 6.4e-190 668.3 726 56.2
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 1.9e-189 666.8 721 54.9
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 3.2e-189 666.0 707 55.0
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.2e-189 666.0 707 55.2
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.2e-189 666.0 722 54.3
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 7.0e-189 664.8 715 55.4
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.3e-187 660.6 715 54.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.7e-187 660.2 728 55.8
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.0e-187 658.7 711 53.7
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 5.0e-187 658.7 714 55.5
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.5e-186 656.4 722 54.6
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 9.5e-186 654.4 706 54.2
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 6.2e-185 651.7 715 54.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.8e-184 650.2 713 53.4
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 8.9e-184 647.9 714 52.9
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 8.9e-184 647.9 711 54.4
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 4.4e-183 645.6 717 53.6
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 4.4e-183 645.6 712 54.4
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 5.8e-183 645.2 709 53.7
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 7.5e-183 644.8 717 52.7
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 2.4e-181 639.8 714 52.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.2e-181 639.4 707 52.3
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 4.1e-181 639.0 698 54.9
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.1e-180 636.7 716 54.1
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.7e-179 633.6 706 53.3
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.1e-177 626.7 711 52.7
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 4.7e-177 625.5 726 53.7
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 6.2e-177 625.2 706 52.8
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-176 624.4 715 52.2
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.7e-172 609.8 712 52.4
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.6e-172 609.0 866 45.7
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.7e-171 607.1 718 52.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.6e-171 605.1 714 50.7
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.5e-170 604.0 685 53.7
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.3e-170 602.4 701 51.6
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.6e-170 602.1 709 52.6
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 3.6e-169 599.4 707 52.8
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.0e-167 593.6 731 51.4
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.3e-166 590.9 703 50.5
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.7e-166 590.5 707 52.2
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.1e-165 585.1 712 49.6
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 9.2e-165 584.7 728 51.5
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 6.0e-164 582.0 721 49.8
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.1e-163 578.9 708 49.7
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.2e-161 574.3 711 49.6
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.1e-160 569.7 741 48.2
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 4.4e-159 565.8 711 48.5
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 4.4e-159 565.8 645 53.0
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 5.1e-155 552.4 707 47.9
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.7e-148 530.0 691 49.5
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 3.7e-145 519.6 719 47.4
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.5e-138 497.7 731 46.1
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-128 463.8 373 67.6
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.5e-126 455.3 375 62.9
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 8.5e-126 455.3 375 62.9
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.6e-124 451.1 382 63.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.0e-123 446.8 745 40.9
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.9e-118 430.3 683 44.7
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.2e-113 414.1 323 70.0
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 8.2e-113 412.1 607 44.2
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 8.0e-108 395.6 549 49.2
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 5.7e-106 389.4 323 65.3
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 8.8e-99 365.5 749 38.6
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 5.5e-93 346.3 717 37.2
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.2e-92 345.1 739 37.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 8.6e-86 322.4 769 34.9
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.2e-84 318.5 395 49.9
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.4e-83 315.1 484 42.4
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 6.8e-83 312.8 390 47.7
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 8.3e-81 305.8 390 47.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.7e-70 271.6 625 35.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 2.6e-58 231.1 586 34.3
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.2e-56 224.2 406 40.6
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-51 208.0 152 73.0
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 2.4e-51 208.0 343 43.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.4e-48 198.0 864 27.2
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.5e-45 188.7 348 40.8
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.0e-39 166.8 221 43.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.3e-38 164.9 251 39.4
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 8.7e-38 162.9 255 41.2
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.5e-37 162.2 344 36.9
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.8e-30 138.7 398 30.4
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.7e-30 136.7 277 40.1
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.4e-27 129.0 375 30.9
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.2e-25 121.7 69 85.5
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 8.4e-25 119.8 69 85.5
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.4e-24 119.0 164 47.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 3.2e-24 117.9 425 26.6
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-20 105.9 62 85.5
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.0e-19 99.8 57 86.0
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.8e-17 94.4 50 90.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.8e-17 94.4 82 52.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 4.2e-16 90.9 50 86.0
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.3e-12 79.3 60 63.3
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.2e-12 78.6 158 38.0
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 7.7e-10 70.1 107 37.4
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.3e-09 69.3 94 43.6
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 1.7e-09 68.9 87 47.1
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.9e-09 68.2 425 27.8
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.8e-09 67.8 46 69.6
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 8.5e-09 66.6 97 44.3


User provided reference genes

Program Settings