Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.9e-140 501.9 256 100.0
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 4.6e-138 494.6 256 98.4
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 1.8e-137 492.7 266 95.9
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.5e-136 489.6 256 97.3
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.5e-133 479.6 293 86.3
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 2.6e-133 478.8 259 94.6
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 3.1e-126 455.3 259 88.4
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.1e-118 430.3 259 83.4
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 1.1e-118 430.3 259 83.8
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.4e-118 429.1 260 84.2
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 4.1e-118 428.3 259 84.6
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 5.3e-118 427.9 259 84.2
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.2e-114 416.8 259 81.5
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 1.0e-105 387.1 250 77.6
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.3e-89 332.8 246 72.0
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 2.6e-88 329.3 242 69.8
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 2.6e-88 329.3 245 68.6
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 9.8e-88 327.4 243 66.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.3e-87 327.0 236 68.6
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.7e-87 326.6 242 71.9
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 2.2e-87 326.2 244 67.2
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 3.7e-87 325.5 237 68.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 6.3e-87 324.7 245 69.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.3e-87 324.3 255 66.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.4e-86 323.6 233 73.0
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.4e-86 323.6 234 70.5
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 5.4e-86 321.6 245 67.8
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 5.4e-86 321.6 246 67.9
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 7.0e-86 321.2 244 66.8
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 9.2e-86 320.9 253 64.4
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.6e-85 320.1 244 68.0
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.7e-85 319.3 244 66.8
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.7e-85 319.3 244 65.2
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 3.5e-85 318.9 243 67.9
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 7.8e-85 317.8 238 68.9
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 7.8e-85 317.8 233 69.1
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 1.3e-84 317.0 245 66.5
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.3e-84 317.0 247 64.8
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 2.9e-84 315.8 274 64.2
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 2.9e-84 315.8 248 65.7
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.6e-84 314.7 246 68.7
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 6.6e-84 314.7 240 68.8
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 8.6e-84 314.3 253 64.4
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 8.6e-84 314.3 246 68.3
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 8.6e-84 314.3 236 66.5
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 8.6e-84 314.3 252 63.5
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.1e-83 313.9 236 68.2
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.5e-83 313.5 244 64.3
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.5e-83 313.5 235 68.5
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 4.3e-83 312.0 246 65.0
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 5.6e-83 311.6 243 65.4
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.2e-82 310.5 236 68.6
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 1.6e-82 310.1 229 69.0
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.1e-82 309.7 238 66.0
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 2.8e-82 309.3 241 66.0
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 3.6e-82 308.9 240 66.2
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 4.7e-82 308.5 231 67.5
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 4.7e-82 308.5 229 68.6
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 4.7e-82 308.5 229 69.0
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.7e-82 308.5 229 68.6
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 8.0e-82 307.8 228 69.3
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.0e-81 307.4 247 64.4
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.4e-81 307.0 239 64.4
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.8e-81 306.6 238 66.4
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 5.2e-81 305.1 234 65.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 5.2e-81 305.1 236 64.8
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 5.2e-81 305.1 236 66.9
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 5.2e-81 305.1 246 63.0
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 6.8e-81 304.7 226 68.6
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 6.8e-81 304.7 243 65.0
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 6.8e-81 304.7 232 64.7
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 8.9e-81 304.3 252 61.1
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 1.2e-80 303.9 236 67.8
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 1.5e-80 303.5 253 62.1
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 4.4e-80 302.0 228 66.2
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 5.8e-80 301.6 243 63.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 2.9e-79 299.3 238 64.7
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 6.4e-79 298.1 237 64.1
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.4e-78 297.0 237 65.0
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 1.9e-78 296.6 232 64.7
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 4.1e-78 295.4 234 65.4
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 7.0e-78 294.7 234 65.4
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.0e-78 294.7 235 65.1
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 7.0e-78 294.7 243 60.5
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 2.7e-77 292.7 234 64.5
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 3.5e-77 292.4 211 70.6
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.0e-76 290.8 237 62.4
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 1.3e-76 290.4 240 63.8
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.9e-76 288.9 239 65.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 6.6e-76 288.1 234 64.1
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 6.6e-76 288.1 233 62.2
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.3e-75 285.8 243 61.7
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 3.3e-75 285.8 254 57.5
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 4.3e-75 285.4 244 59.0
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 4.3e-75 285.4 244 59.0
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 6.2e-74 281.6 205 65.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 6.4e-71 271.6 192 68.8
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.0e-68 262.7 190 68.4
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 6.6e-68 261.5 246 58.5
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.6e-61 240.4 155 73.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.1e-61 240.0 164 70.1
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 6.6e-60 235.0 140 77.9
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.5e-59 233.8 137 78.8
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 2.5e-59 233.0 150 72.0
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.4e-57 227.3 255 49.8
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 9.9e-56 221.1 184 59.2
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 6.4e-55 218.4 190 57.4
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 4.2e-54 215.7 184 60.3
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 3.0e-52 209.5 189 58.7
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.6e-52 208.4 171 63.2
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 6.9e-49 198.4 172 62.8
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 5.8e-48 195.3 169 63.3
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 7.6e-40 168.3 256 39.8
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.0e-28 131.3 103 62.1
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 8.2e-26 121.7 92 67.4
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 8.2e-26 121.7 81 66.7
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 3.4e-24 116.3 83 69.9
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 8.4e-23 111.7 58 82.8
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.2e-21 107.8 186 44.1
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 1.1e-19 101.3 74 66.2
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 2.5e-19 100.1 219 34.7
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.6e-18 97.4 90 53.3
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.4e-17 93.6 133 36.8
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 6.9e-17 92.0 58 72.4
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 2.0e-16 90.5 65 73.8
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 4.2e-14 82.8 93 52.7
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 4.2e-14 82.8 118 46.6
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 4.6e-13 79.3 176 35.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 4.6e-13 79.3 57 61.4
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.9e-13 78.6 203 33.0
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.8e-12 77.4 58 58.6
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.0e-12 76.6 89 48.3
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 3.9e-12 76.3 56 62.5
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.8e-12 75.1 145 41.4


User provided reference genes

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