Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 3.9e-144 515.0 301 100.0
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.1e-141 506.9 301 99.0
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 1.8e-133 479.6 302 90.1
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.2e-132 476.9 301 89.4
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.2e-115 419.5 297 77.1
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 6.5e-99 364.8 300 69.0
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 5.5e-98 361.7 298 67.1
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 2.1e-97 359.8 300 66.7
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 2.8e-94 349.4 231 79.2
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.0e-91 340.9 301 65.8
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.2e-79 300.8 299 59.2
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 5.9e-76 288.5 231 66.7
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.2e-68 264.2 293 49.8
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 6.6e-67 258.5 232 59.5
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.2e-65 254.2 228 57.9
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 8.0e-65 251.5 236 56.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.0e-64 251.1 236 56.8
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.0e-64 251.1 236 56.8
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 3.0e-64 249.6 221 58.8
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 1.5e-63 247.3 311 46.3
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 3.4e-63 246.1 229 55.5
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 4.4e-63 245.7 293 47.1
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 9.8e-63 244.6 217 58.5
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 9.8e-63 244.6 217 58.5
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 9.8e-63 244.6 239 57.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 9.8e-63 244.6 310 45.5
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.3e-62 244.2 226 58.8
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.7e-62 243.8 216 60.2
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 3.7e-62 242.7 221 57.5
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 6.4e-62 241.9 224 56.7
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 6.4e-62 241.9 220 58.2
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.1e-61 241.1 305 45.2
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 9.2e-61 238.0 234 53.4
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.0e-59 234.6 213 56.3
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.7e-59 233.8 215 56.3
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 2.3e-59 233.4 311 45.7
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 8.6e-59 231.5 320 43.8
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.5e-58 230.7 294 54.8
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.5e-58 230.7 222 54.5
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.5e-58 229.9 215 56.3
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 7.3e-58 228.4 225 55.1
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 7.3e-58 228.4 225 55.1
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.6e-57 227.3 217 56.7
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 2.1e-57 226.9 312 44.9
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.2e-57 225.3 235 53.6
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 1.4e-56 224.2 224 51.8
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 3.1e-56 223.0 230 55.2
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 6.8e-56 221.9 205 58.0
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 8.9e-56 221.5 216 53.2
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.5e-55 220.7 219 53.9
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 2.0e-55 220.3 228 52.2
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 2.6e-55 219.9 222 52.3
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 5.8e-55 218.8 216 54.2
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.3e-54 217.6 230 52.2
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 2.2e-54 216.9 230 52.2
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 2.2e-54 216.9 216 53.2
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 2.9e-54 216.5 215 53.0
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 2.9e-54 216.5 293 44.4
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 6.4e-54 215.3 224 50.9
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.4e-53 214.2 280 46.1
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.4e-53 214.2 216 52.3
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.9e-53 213.8 227 49.8
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.9e-53 213.8 217 53.0
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 3.5e-52 209.5 214 53.7
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.0e-51 206.5 226 52.2
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 8.6e-51 204.9 241 49.0
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 5.6e-50 202.2 305 42.6
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 7.3e-50 201.8 229 51.1
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.6e-49 200.7 197 54.3
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 2.8e-49 199.9 236 48.7
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 3.6e-49 199.5 226 49.1
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.8e-48 197.2 206 50.0
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.8e-48 197.2 206 50.0
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 8.9e-48 194.9 239 47.7
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.7e-46 190.7 193 52.8
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.2e-46 190.3 218 48.6
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.1e-45 188.0 231 47.2
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.9e-45 187.2 266 42.1
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 3.2e-45 186.4 246 45.9
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 4.1e-45 186.0 196 51.5
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 1.2e-44 184.5 235 45.1
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 1.0e-43 181.4 236 47.5
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.0e-43 181.4 218 46.8
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.0e-43 181.4 291 37.1
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 8.6e-43 178.3 187 53.5
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.5e-42 176.8 291 36.1
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 9.5e-42 174.9 205 47.8
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.4e-40 171.0 299 38.8
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.4e-40 171.0 221 45.7
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.4e-40 171.0 232 42.7
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 2.4e-40 170.2 186 50.5
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 2.6e-39 166.8 264 40.5
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 5.8e-39 165.6 186 50.0
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 7.6e-39 165.2 218 43.6
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 7.1e-37 158.7 157 55.4
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.3e-35 154.5 161 52.8
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.1e-34 151.4 202 46.5
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 3.3e-34 149.8 174 49.4
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 7.3e-34 148.7 203 44.3
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 6.9e-32 142.1 192 47.4
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 9.9e-31 138.3 231 39.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 8.4e-30 135.2 118 55.9
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.2e-28 131.3 109 56.0
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.0e-28 129.0 187 44.9
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.3e-27 127.1 137 52.6
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 3.0e-27 126.7 226 39.4
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 6.6e-27 125.6 233 38.6
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 1.1e-26 124.8 188 40.4
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.5e-26 124.4 219 32.9
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 4.3e-26 122.9 193 40.4
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.6e-26 122.5 140 47.1
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.3e-25 121.3 98 58.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.8e-25 119.4 203 38.4
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 5.3e-24 115.9 224 32.6
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 5.8e-23 112.5 187 40.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.4e-21 107.1 63 77.8
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.4e-21 107.1 63 77.8
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.3e-19 101.3 205 37.6
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.3e-17 94.7 203 34.0
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.1e-17 94.0 104 46.2
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.4e-16 91.3 112 44.6
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.4e-16 90.5 132 47.7
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 2.9e-14 83.6 62 58.1
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 4.2e-13 79.7 122 41.0
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 1.6e-09 67.8 137 35.0
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 3.7e-09 66.6 93 46.2
BraA03t11621Z Brassica rapa HOM05D005876 ORTHO05D007326 5.8e-07 59.3 80 46.2
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 6.5e-06 55.8 183 24.0


User provided reference genes

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