Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.6e-248 863.2 818 100.0
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 4.5e-235 818.5 819 96.3
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 4.5e-235 818.5 819 96.3
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 9.1e-212 741.1 820 93.7
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 3.4e-174 616.3 811 84.6
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 1.8e-143 514.2 816 76.7
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 6.0e-131 472.6 811 77.9
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 3.0e-130 470.3 810 79.8
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 5.1e-130 469.5 810 78.6
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 6.4e-125 452.6 819 74.5
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.8e-118 429.5 804 70.1
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 4.6e-115 419.9 834 69.8
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 6.3e-112 409.5 262 90.8
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 9.4e-108 395.6 789 69.8
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.3e-104 385.2 791 68.0
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.7e-104 384.8 797 68.3
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 9.1e-103 379.0 872 53.3
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.4e-98 365.2 788 68.1
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 1.8e-98 364.8 796 67.6
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.3e-96 358.6 795 70.7
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 3.1e-95 354.0 812 65.0
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 2.1e-91 341.3 813 64.7
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 6.1e-91 339.7 797 63.9
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 3.0e-90 337.4 802 62.1
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 7.4e-89 332.8 748 61.8
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 1.7e-88 331.6 724 76.9
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 4.8e-88 330.1 832 57.7
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.1e-84 318.9 800 65.4
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 4.2e-84 317.0 848 61.9
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 6.1e-83 313.2 162 94.4
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.2e-80 304.7 789 63.4
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.1e-79 302.4 803 64.1
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.1e-79 300.4 302 58.6
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 3.8e-77 293.9 788 64.2
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 8.5e-77 292.7 825 63.2
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.1e-76 292.4 782 64.6
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.1e-75 288.1 786 64.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 1.8e-74 285.0 785 64.8
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 3.0e-74 284.3 851 47.8
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 1.2e-73 282.3 788 54.8
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 2.0e-73 281.6 811 62.4
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 4.4e-73 280.4 809 63.5
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 9.8e-73 279.3 785 64.5
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 1.8e-71 275.0 786 56.5
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 1.6e-70 271.9 787 60.7
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 2.0e-70 271.6 812 62.8
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 4.5e-70 270.4 781 64.4
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 1.0e-69 269.2 812 62.4
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 3.8e-69 267.3 785 63.4
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 5.0e-69 266.9 800 59.6
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 3.3e-68 264.2 780 67.7
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.6e-67 261.9 779 52.6
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 2.1e-67 261.5 783 67.0
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 2.8e-67 261.2 263 58.6
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 8.0e-67 259.6 813 62.0
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 1.0e-66 259.2 778 64.9
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.4e-66 258.8 811 62.3
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 1.4e-66 258.8 814 58.4
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.0e-66 257.3 783 63.3
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 6.8e-66 256.5 811 62.3
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.0e-65 255.0 783 63.0
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 5.7e-65 253.4 828 60.3
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 5.7e-65 253.4 804 62.2
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 7.5e-65 253.1 808 62.4
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 6.3e-64 250.0 804 58.6
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 9.2e-63 246.1 159 73.6
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 3.5e-62 244.2 780 62.4
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 4.5e-62 243.8 800 65.2
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.8e-61 240.7 794 61.2
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 6.6e-61 240.0 781 62.7
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 1.5e-60 238.8 818 60.9
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 3.3e-60 237.7 784 61.9
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 3.1e-58 231.1 156 66.0
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 8.9e-58 229.6 152 68.4
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 4.4e-57 227.3 169 61.5
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 7.5e-57 226.5 755 62.9
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 9.8e-57 226.1 810 60.5
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.9e-56 224.6 152 67.1
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 1.1e-55 222.6 770 62.7
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 5.4e-55 220.3 150 65.3
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 5.4e-55 220.3 169 60.9
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 1.2e-54 219.2 773 60.9
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 3.5e-54 217.6 171 61.4
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 7.8e-54 216.5 152 65.1
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.0e-53 216.1 156 63.5
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 1.7e-53 215.3 757 61.8
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 6.6e-53 213.4 803 58.8
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.5e-52 212.2 162 58.6
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 4.3e-52 210.7 150 65.3
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 7.3e-52 209.9 155 60.0
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.6e-51 208.8 246 43.1
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.1e-51 208.4 157 63.7
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 3.6e-51 207.6 185 57.8
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 8.0e-51 206.5 155 59.4
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 2.3e-50 204.9 156 57.1
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.2e-50 203.8 156 59.6
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.2e-49 202.6 161 57.8
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.5e-49 202.2 159 57.2
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 8.3e-48 196.4 176 55.1
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.3e-45 189.1 104 92.3
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.6e-43 182.2 150 53.3
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.1e-43 181.8 157 51.6
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.4e-42 179.1 151 56.3
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 4.7e-35 154.1 122 59.0
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 1.5e-33 149.1 170 46.5
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 4.4e-33 147.5 147 50.3
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 9.9e-33 146.4 115 58.3
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 7.1e-31 140.2 142 41.5
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 2.1e-30 138.7 367 26.7
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 6.0e-30 137.1 175 57.7
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.2e-27 127.1 134 48.5
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.8e-26 125.6 113 51.3
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 4.0e-26 124.4 118 49.2
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 2.6e-25 121.7 91 60.4
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 1.3e-24 119.4 118 47.5
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 2.2e-24 118.6 128 44.5
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 8.4e-24 116.7 114 55.3
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 7.1e-23 113.6 116 46.6
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 7.1e-23 113.6 120 46.7
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.7e-22 111.7 117 49.6
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 2.7e-22 111.7 104 50.0
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 2.3e-21 108.6 65 73.8
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.3e-20 104.8 97 52.6
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 2.8e-19 101.7 93 50.5
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.8e-18 99.0 66 66.7
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 6.4e-16 90.5 84 48.8
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.3e-13 82.0 116 38.8
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 9.6e-12 76.6 101 36.6
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.3e-11 76.3 66 50.0
Os02g0679200 Oryza sativa ssp. japonica HOM05D007383 ORTHO05D009254 4.0e-10 71.2 114 36.0
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 9.0e-10 70.1 101 33.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 3.4e-09 68.2 265 22.3
BcaNung06711 Brassica carinata HOM05D058088 ORTHO05D039019 1.7e-08 65.9 70 51.4
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.2e-08 65.5 265 21.1
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 2.2e-08 65.5 265 22.3
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 2.9e-08 65.1 87 39.1
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 6.4e-08 63.9 113 27.4
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 8.4e-08 63.5 97 29.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.1e-07 63.2 113 27.4
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.9e-07 62.4 113 27.4
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 1.9e-07 62.4 103 31.1
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 2.5e-07 62.0 256 26.6
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 3.2e-07 61.6 113 27.4
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 4.2e-07 61.2 105 33.3
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 5.5e-07 60.8 113 29.2
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 5.5e-07 60.8 99 36.4
PGSC0003DMG400015467 Solanum tuberosum HOM05D000891 ORTHO05D000761 5.5e-07 60.8 105 33.3
VMungo1309G1222 Vigna mungo HOM05D001779 ORTHO05D001753 5.5e-07 60.8 114 31.6
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 7.1e-07 60.5 105 33.3
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 9.3e-07 60.1 111 27.9
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 9.3e-07 60.1 111 27.9
Psat2g007600 Pisum sativum HOM05D006106 ORTHO05D007662 9.3e-07 60.1 64 51.6
Sopen02g013930 Solanum pennellii HOM05D000891 ORTHO05D000761 9.3e-07 60.1 105 33.3
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 1.2e-06 59.7 273 20.9
Sc07g0000240 Simmondsia chinensis HOM05D000891 ORTHO05D000761 1.2e-06 59.7 107 33.6
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 1.6e-06 59.3 96 32.3
PGR083G2638 Punica granatum HOM05D008684 ORTHO05D010796 1.6e-06 59.3 120 25.8
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 2.1e-06 58.9 114 27.2
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 2.1e-06 58.9 146 25.3
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 2.1e-06 58.9 103 28.2
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 2.7e-06 58.5 105 30.5
CAN.G53.43 Capsicum annuum HOM05D000891 ORTHO05D000761 2.7e-06 58.5 105 33.3
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.5e-06 58.2 257 21.4
Peaxi162Scf00515g00029 Petunia axillaris HOM05D000891 ORTHO05D000761 3.5e-06 58.2 105 31.4
Pp3c6_26920 Physcomitrium patens HOM05D003056 ORTHO05D037348 3.5e-06 58.2 116 25.0
SMO010G0006 Selaginella moellendorffii HOM05D000855 ORTHO05D000003 3.5e-06 58.2 102 33.3
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 4.6e-06 57.8 94 35.1
ECA238G4369 Erigeron canadensis HOM05D000891 ORTHO05D000761 4.6e-06 57.8 105 30.5
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 4.6e-06 57.8 113 27.4
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 6.0e-06 57.4 95 32.6
CAN.G484.86 Capsicum annuum HOM05D001779 ORTHO05D001753 6.0e-06 57.4 103 30.1
Cpa.g.sc224.1 Carica papaya HOM05D006106 ORTHO05D007662 6.0e-06 57.4 107 31.8
Rhsim03G0026600 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.0e-06 57.4 56 46.4
Lj4g0024045 Lotus japonicus HOM05D001779 ORTHO05D001753 7.9e-06 57.0 95 32.6
Lalb_Chr23g0275861 Lupinus albus HOM05D001620 ORTHO05D005461 7.9e-06 57.0 86 34.9


User provided reference genes

Program Settings