Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.4e-223 778.5 376 100.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.8e-197 691.4 391 87.7
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.8e-197 691.4 391 88.0
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 8.4e-197 690.3 391 87.7
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 9.3e-196 686.8 391 87.5
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 9.3e-196 686.8 391 87.5
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 9.3e-196 686.8 391 87.5
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 2.7e-195 685.3 391 87.2
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 6.1e-195 684.1 391 86.4
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 6.1e-195 684.1 391 86.4
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 1.8e-194 682.6 391 86.4
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 5.1e-194 681.0 391 87.0
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 3.7e-192 674.9 393 86.0
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.3e-189 666.4 390 85.6
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.4e-188 662.9 390 84.6
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.5e-188 662.1 390 85.1
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.5e-188 661.0 390 84.4
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.8e-186 656.0 375 88.5
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.7e-179 632.1 366 86.6
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 4.1e-175 618.2 375 85.9
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 5.9e-174 614.4 421 74.6
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.2e-163 580.1 384 72.7
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.6e-163 579.7 381 73.8
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 4.7e-163 578.2 383 72.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 6.1e-163 577.8 391 71.4
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 6.1e-163 577.8 384 71.9
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.4e-162 576.6 384 71.4
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.0e-162 575.5 390 70.8
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 5.2e-162 574.7 339 85.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.4e-161 571.6 342 83.9
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 5.7e-161 571.2 384 71.6
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.7e-160 568.5 381 71.4
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 1.4e-159 566.6 383 77.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 2.4e-159 565.8 383 70.0
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.4e-159 565.8 384 70.3
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 1.2e-158 563.5 384 69.5
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.2e-158 563.5 379 71.2
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.6e-158 563.1 384 70.6
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 5.9e-158 561.2 384 70.1
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 7.7e-158 560.8 384 70.3
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.0e-157 560.5 379 71.2
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.7e-157 559.7 384 69.8
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 2.9e-157 558.9 385 70.6
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 2.9e-157 558.9 381 71.4
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.9e-157 558.9 384 70.3
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.5e-156 556.6 384 69.0
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.5e-156 556.6 384 70.1
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 3.0e-154 548.9 381 69.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 4.0e-154 548.5 385 68.3
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 6.8e-154 547.7 325 78.5
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.2e-153 547.0 387 70.3
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.4e-153 545.4 378 69.6
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 7.5e-153 544.3 393 68.7
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 9.8e-153 543.9 381 69.0
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.7e-152 543.1 377 70.0
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.8e-152 542.3 381 66.9
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 8.3e-152 540.8 381 67.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.4e-151 540.0 383 68.1
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.8e-151 539.7 383 68.9
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 4.1e-151 538.5 386 69.9
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.7e-150 535.8 419 63.5
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 4.5e-150 535.0 381 67.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 4.5e-150 535.0 380 68.4
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.3e-149 533.5 381 67.2
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 8.6e-149 530.8 384 66.1
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 1.9e-148 529.6 388 67.5
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.6e-147 526.6 380 66.8
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 3.6e-147 525.4 381 66.9
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.3e-146 522.7 391 66.0
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 3.4e-145 518.8 381 65.4
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 2.9e-144 515.8 402 64.7
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 5.4e-143 511.5 378 66.1
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 4.6e-142 508.4 376 65.4
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 5.9e-142 508.1 388 65.7
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.3e-140 501.9 361 68.4
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 2.8e-139 499.2 291 78.7
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 3.4e-137 492.3 344 69.5
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.3e-136 490.3 378 65.1
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.9e-136 489.2 388 63.4
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 3.7e-136 488.8 363 64.7
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 6.4e-136 488.0 384 62.5
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 8.3e-136 487.6 381 63.3
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 5.4e-135 485.0 339 69.9
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 5.6e-132 474.9 385 61.6
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.8e-131 472.6 381 61.7
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 3.6e-131 472.2 263 83.3
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 6.2e-131 471.5 388 60.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.3e-130 469.5 384 61.5
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 5.2e-130 468.4 384 61.2
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 5.8e-129 464.9 393 59.8
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 4.9e-128 461.8 379 60.9
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 1.9e-127 459.9 391 59.3
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 7.1e-127 458.0 384 60.2
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 9.2e-127 457.6 384 59.6
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 5.6e-124 448.4 385 58.4
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 7.3e-124 448.0 384 58.9
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 2.8e-123 446.0 384 58.9
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 8.1e-123 444.5 267 77.9
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.4e-122 443.7 388 55.4
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 5.2e-122 441.8 384 58.9
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.8e-122 441.4 378 63.2
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.0e-121 439.9 380 57.9
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 4.4e-121 438.7 354 64.1
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 5.8e-121 438.3 384 58.1
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.7e-120 436.8 384 58.1
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.4e-119 433.0 384 57.3
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.7e-118 429.5 383 57.2
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 4.6e-118 428.7 384 56.5
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 2.3e-117 426.4 388 55.9
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 5.1e-117 425.2 384 57.0
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 5.1e-117 425.2 384 57.0
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 5.1e-117 425.2 263 74.1
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 1.8e-114 416.8 291 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 9.9e-113 411.0 371 55.8
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.8e-110 401.4 384 54.2
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.0e-109 401.0 395 51.1
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 8.7e-109 397.9 380 51.6
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 5.3e-106 388.7 384 50.5
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 4.4e-105 385.6 395 49.4
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 4.9e-104 382.1 384 54.2
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.8e-98 363.6 234 72.6
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 3.5e-94 349.4 314 58.9
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.0e-89 333.6 319 53.9
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-76 291.2 150 90.7
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.7e-75 286.2 147 90.5
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.9e-71 273.9 416 38.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 2.2e-67 260.4 271 50.2
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.3e-60 236.5 218 57.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.5e-55 221.1 374 36.4
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.5e-55 220.3 219 53.4
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 3.6e-54 216.5 134 73.1
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.7e-49 200.3 229 49.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.1e-42 178.3 136 62.5
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.4e-42 177.9 112 70.5
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 4.2e-39 166.4 286 32.9
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.4e-37 161.4 145 57.2
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 9.2e-34 148.7 92 71.7
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.9e-33 146.0 134 55.2
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 9.2e-26 122.1 291 28.9
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.3e-24 117.5 57 89.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.5e-23 114.8 156 42.9
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.5e-20 104.8 52 88.5
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.1e-18 98.6 74 63.5
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 4.6e-17 93.2 69 65.2
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.1e-14 84.3 55 78.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 6.2e-14 82.8 76 56.6
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.4e-12 76.6 48 77.1


User provided reference genes

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