Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 6.6e-218 760.4 373 100.0
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 6.6e-218 760.4 373 100.0
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 6.0e-171 604.4 297 100.0
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 6.0e-171 604.4 297 100.0
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 6.0e-171 604.4 297 100.0
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.5e-169 599.7 298 99.7
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 1.7e-144 516.5 263 96.6
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 6.3e-136 488.0 318 79.9
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.1e-135 487.3 283 86.2
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 1.9e-132 476.5 253 92.9
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 8.0e-131 471.1 232 100.0
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.5e-129 466.8 233 99.1
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 2.0e-129 466.5 235 98.3
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 4.4e-129 465.3 233 98.7
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 7.7e-126 454.5 259 85.7
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.0e-125 451.8 313 74.4
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 5.0e-125 451.8 313 74.4
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 2.0e-121 439.9 333 70.9
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.7e-120 436.8 233 92.7
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 8.3e-120 434.5 231 92.6
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.4e-119 433.7 233 91.8
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 7.0e-119 431.4 230 92.6
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.6e-118 430.3 230 92.2
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.0e-118 429.9 230 92.2
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.7e-118 429.5 230 91.7
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 3.5e-118 429.1 229 92.1
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 3.5e-118 429.1 229 92.1
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 1.0e-117 427.6 230 91.7
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-116 423.7 243 87.2
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.8e-115 419.5 230 90.9
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 5.2e-114 415.2 224 92.4
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 7.5e-113 411.4 220 92.7
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 9.8e-113 411.0 222 91.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 1.3e-112 410.6 204 100.0
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.9e-112 409.5 220 92.3
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 4.9e-112 408.7 220 91.8
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.4e-111 407.1 220 92.3
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 3.5e-110 402.5 223 87.4
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 3.1e-106 389.4 232 81.9
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 8.9e-106 387.9 233 80.3
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.9e-103 380.2 204 90.7
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 7.0e-103 378.3 235 83.0
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 9.2e-103 377.9 206 89.8
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 2.3e-101 373.2 202 90.6
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 3.0e-101 372.9 225 86.2
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 2.1e-99 366.7 281 70.5
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 6.0e-94 348.6 192 92.2
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 4.7e-91 339.0 201 87.1
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 4.0e-90 335.9 191 89.5
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 6.4e-88 328.6 171 95.9
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 3.6e-83 312.8 170 92.4
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 3.0e-77 293.1 147 95.9
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 3.6e-75 286.2 219 69.9
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 3.4e-73 279.6 167 82.6
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.0e-66 256.1 196 71.4
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 4.0e-66 256.1 196 71.4
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 2.6e-65 253.4 154 84.4
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.5e-60 236.9 126 91.3
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.5e-60 236.9 126 91.3
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.5e-60 236.9 126 91.3
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.5e-60 236.9 126 91.3
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.5e-60 236.9 126 91.3
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.6e-60 235.7 128 89.1
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 2.1e-59 233.8 132 87.1
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 8.2e-59 231.9 128 87.5
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-58 231.5 126 90.5
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 3.1e-58 229.9 135 83.0
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.3e-58 229.2 127 87.4
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 7.6e-57 225.3 126 88.9
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 2.2e-56 223.8 126 88.1
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.0e-53 214.9 126 84.9
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 2.4e-50 203.8 124 82.3
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 6.5e-48 195.7 103 94.2
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 6.5e-48 195.7 103 94.2
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 6.5e-48 195.7 103 94.2
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.4e-47 194.5 104 89.4
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.9e-47 194.1 104 88.5
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 2.5e-47 193.7 118 83.1
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 3.2e-47 193.4 121 81.0
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.6e-46 189.5 120 81.7
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.0e-45 188.3 126 68.3
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 5.7e-44 182.6 115 79.1
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 1.3e-43 181.4 109 84.4
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 1.8e-42 177.6 85 100.0
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.2e-39 166.8 101 81.2
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 4.2e-39 166.4 104 79.8
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 4.2e-39 166.4 106 82.1
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.6e-38 164.5 89 88.8
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 1.8e-37 161.0 86 88.4
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 5.1e-37 159.5 81 92.6
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 6.7e-37 159.1 104 71.2
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-36 157.9 94 85.1
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.5e-36 157.9 94 85.1
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 5.7e-36 156.0 91 82.4
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.7e-35 154.5 87 82.8
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 4.8e-35 152.9 84 89.3
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 8.2e-35 152.1 155 54.8
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 2.2e-32 144.1 74 91.9
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 2.9e-32 143.7 106 73.6
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 2.5e-31 140.6 84 85.7
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 9.4e-31 138.7 103 67.0
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 2.7e-30 137.1 90 76.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.3e-29 134.0 82 79.3
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 3.0e-29 133.7 72 93.1
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.5e-28 131.3 74 83.8
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 7.4e-28 129.0 126 59.5
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.4e-28 129.0 68 86.8
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 2.8e-27 127.1 128 46.1
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 6.3e-27 125.9 126 54.8
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 6.3e-27 125.9 77 77.9
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 3.1e-26 123.6 92 60.9
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 2.0e-25 120.9 104 63.5
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.5e-25 120.2 120 55.0
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.5e-25 119.8 61 93.4
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 2.9e-24 117.1 113 54.0
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 4.2e-23 113.2 57 89.5
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 2.7e-22 110.5 201 37.8
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 3.6e-22 110.2 59 91.5
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-20 105.1 71 63.4
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 2.0e-20 104.4 55 81.8
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 3.3e-20 103.6 60 76.7
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 9.7e-20 102.1 126 50.0
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 2.8e-19 100.5 46 100.0
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 3.1e-18 97.1 44 100.0
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 3.1e-18 97.1 44 100.0
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 7.0e-18 95.9 46 91.3
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 9.1e-18 95.5 69 73.9
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 9.1e-18 95.5 45 93.3
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-17 95.1 57 78.9
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 4.5e-17 93.2 50 88.0
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.0e-16 92.0 59 78.0
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 1.1e-15 88.6 42 92.9
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.2e-15 85.9 52 84.6
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 1.4e-13 81.6 58 74.1
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 5.2e-13 79.7 48 77.1
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 1.2e-12 78.6 44 84.1
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 1.2e-12 78.6 74 62.2
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 3.4e-12 77.0 40 87.5
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 5.7e-12 76.3 54 66.7
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 4.8e-11 73.2 48 81.2
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.4e-10 71.6 77 51.9
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 4.1e-10 70.1 49 67.3
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 5.4e-10 69.7 45 82.2
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 5.4e-10 69.7 110 44.5
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 2.7e-09 67.4 49 69.4
ECA247G3849 Erigeron canadensis HOM05D000031 ORTHO05D000030 7.7e-09 65.9 35 85.7
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 1.7e-08 64.7 72 51.4
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 7.2e-07 59.3 46 63.0
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 1.2e-06 58.5 156 31.4
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 3.6e-06 57.0 49 61.2
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 8.0e-06 55.8 106 43.4


User provided reference genes

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