Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 0.0e+00 1115.5 564 100.0
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 0.0e+00 1097.8 564 98.6
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 3.0e-307 1057.7 566 95.8
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 9.1e-304 1046.2 566 94.9
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 1.3e-286 989.2 501 99.8
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 7.3e-253 877.1 560 84.3
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 2.3e-251 872.1 575 81.6
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 5.4e-248 860.9 552 84.1
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 1.2e-247 859.8 531 85.7
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 9.9e-242 840.1 431 98.8
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 1.3e-236 823.2 575 78.4
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.4e-235 819.7 544 80.5
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 9.0e-235 817.0 544 80.3
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 1.9e-232 809.3 549 80.1
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 3.9e-230 801.6 535 80.7
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 4.0e-227 791.6 542 79.0
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 6.9e-227 790.8 526 80.4
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 2.4e-224 782.3 445 91.0
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 2.1e-223 779.2 503 82.5
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 3.2e-216 755.4 537 76.5
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 2.3e-214 749.2 484 82.6
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 1.2e-207 726.9 512 78.1
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 1.2e-207 726.9 512 78.1
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.9e-206 721.8 473 82.5
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.9e-206 721.8 473 82.5
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 1.0e-201 707.2 491 78.8
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 1.0e-201 707.2 491 78.8
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 1.6e-199 699.9 636 64.3
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.9e-199 697.6 470 80.9
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 1.7e-196 689.9 354 99.4
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.2e-196 687.6 473 79.9
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.1e-195 685.3 471 79.8
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 5.0e-193 678.3 532 72.9
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.2e-191 673.7 356 96.1
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 2.0e-189 666.4 403 85.9
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 2.0e-189 666.4 530 71.9
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 6.3e-180 634.8 503 72.0
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 9.1e-179 630.9 563 65.2
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 6.3e-172 608.2 445 75.1
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 3.8e-169 599.0 445 74.2
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 1.0e-166 590.9 350 86.9
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 1.1e-163 580.9 541 64.1
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 2.4e-163 579.7 376 81.6
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 1.3e-161 573.9 529 64.1
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 5.6e-160 568.5 481 66.5
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 5.0e-153 545.4 404 76.0
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 1.5e-152 543.9 369 77.0
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 2.5e-152 543.1 557 59.1
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-149 533.1 503 62.0
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-149 533.1 503 62.0
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-149 533.1 503 62.0
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-149 533.1 503 62.0
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-149 533.1 503 62.0
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 2.9e-148 529.6 557 57.8
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.3e-142 510.0 524 59.4
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 7.6e-133 478.4 322 80.7
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.7e-130 469.9 445 61.6
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 1.1e-128 464.5 314 80.3
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.1e-126 458.0 448 61.6
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.1e-126 458.0 448 61.6
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 4.0e-126 456.1 324 76.9
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 2.6e-125 453.4 505 55.4
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 3.1e-110 403.3 270 82.2
Solyc09g015850.4 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.5e-107 393.7 239 85.4
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.2e-107 392.9 282 75.9
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 2.6e-101 373.6 309 70.6
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 4.5e-101 372.9 285 73.3
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 9.7e-96 355.1 348 61.8
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 2.2e-92 344.0 238 80.3
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.5e-85 319.7 298 63.8
BraSC48t46240Z Brassica rapa HOM05D001987 ORTHO05D006514 7.9e-82 308.9 152 99.3
Peaxi162Scf00238g00149 Petunia axillaris HOM05D001987 ORTHO05D006514 2.6e-80 303.9 182 85.7
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 2.8e-79 300.4 243 70.8
MELO3C028575.2 Cucumis melo HOM05D001987 ORTHO05D006514 3.8e-76 290.0 250 66.0
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 8.2e-71 272.3 666 37.1
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 1.2e-61 241.9 181 75.7
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 2.7e-61 240.7 299 51.2
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.5e-59 233.0 271 52.0
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 2.1e-58 231.1 159 76.7
Sopen05g027070 Solanum pennellii HOM05D001987 ORTHO05D006514 5.9e-53 213.0 135 81.5
BraSC48t46330Z Brassica rapa HOM05D001987 ORTHO05D006514 1.2e-50 205.3 103 100.0
Eucgr.J02744 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.0e-48 198.0 116 86.2
Nitab4.5_0000334g0030 Nicotiana tabacum HOM05D001987 ORTHO05D006514 7.5e-48 196.1 225 56.4
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 2.0e-45 188.0 159 64.2
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 4.5e-45 186.8 267 46.4
Nitab4.5_0009703g0120 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.5e-45 186.8 183 60.1
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 8.6e-44 182.6 135 76.3
Nitab4.5_0010565g0030 Nicotiana tabacum HOM05D000040 ORTHO05D000759 3.7e-39 167.2 122 69.7
CAN.G1202.8 Capsicum annuum HOM05D001987 ORTHO05D006514 1.9e-35 154.8 91 86.8
Nitab4.5_0000309g0220 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.6e-32 144.4 91 79.1
Pp3c2_23480 Physcomitrium patens HOM05D001987 ORTHO05D006514 1.4e-30 138.7 539 30.1
EL10Ac1g01304 Beta vulgaris HOM05D001987 ORTHO05D006514 6.0e-29 133.3 84 79.8
Nitab4.5_0000309g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.3e-28 132.1 96 75.0
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.3e-28 132.1 210 42.9
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 1.7e-28 131.7 145 57.2
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 8.6e-28 129.4 175 51.4
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 4.9e-23 113.6 109 65.1
Nitab4.5_0000334g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.7e-21 107.8 185 38.9
TPR.G21771 Trifolium pratense HOM05D001987 ORTHO05D006514 1.0e-20 105.9 93 62.4
SHI01963 Sapria himalayana HOM05D001987 ORTHO05D006514 3.3e-19 100.9 98 59.2
SHI01961 Sapria himalayana HOM05D001987 ORTHO05D006514 5.6e-19 100.1 249 34.5
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 1.2e-18 99.0 87 69.0
Nitab4.5_0011784g0040 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.4e-17 94.7 62 75.8
Solyc08g045870.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-16 90.1 68 75.0
Solyc12g035815.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.8e-15 87.4 123 45.5
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 4.9e-15 87.0 76 64.5
CAN.G1542.10 Capsicum annuum HOM05D001987 ORTHO05D006514 4.9e-15 87.0 110 48.2
Nitab4.5_0001761g0040 Nicotiana tabacum HOM05D001987 ORTHO05D015637 8.4e-15 86.3 45 88.9
Lsat_1_v5_gn_4_178801 Lactuca sativa HOM05D001987 ORTHO05D006514 1.2e-13 82.4 52 76.9
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 2.7e-13 81.3 124 39.5
Solyc05g045770.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.7e-13 81.3 74 62.2
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.5e-13 80.9 57 75.4
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 6.0e-13 80.1 63 66.7
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 1.0e-12 79.3 53 79.2
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 3.0e-12 77.8 63 63.5
Nitab4.5_0000309g0210 Nicotiana tabacum HOM05D001987 ORTHO05D015637 3.9e-12 77.4 46 80.4
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.9e-12 77.4 61 68.9
Nitab4.5_0007962g0010 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.1e-11 75.9 57 77.2
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.9e-11 75.1 67 64.2
SGA_v2.0_scaffold245G44435 Striga asiatica HOM05D001987 ORTHO05D006514 1.9e-11 75.1 48 77.1
Solyc05g045822.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.6e-11 73.6 67 56.7
Solyc05g045824.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.1e-10 69.7 63 61.9
Solyc05g045828.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.3e-09 67.0 46 78.3
Lalb_Chr19g0127771 Lupinus albus HOM05D001987 ORTHO05D006514 3.4e-08 64.3 47 68.1
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 9.9e-08 62.8 44 72.7
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 2.2e-07 61.6 40 75.0
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 2.2e-07 61.6 167 29.9
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 2.2e-07 61.6 167 29.9
SHI11171 Sapria himalayana HOM05D001987 ORTHO05D006514 3.8e-07 60.8 149 35.6
Solyc05g045826.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.8e-07 60.8 87 50.6
SHI11170 Sapria himalayana HOM05D001987 ORTHO05D006514 2.4e-06 58.2 49 67.3
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 3.2e-06 57.8 172 27.9
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 9.3e-06 56.2 152 28.9


User provided reference genes

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