Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 3.2e-165 586.3 304 100.0
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 3.2e-165 586.3 304 100.0
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 3.5e-156 556.2 307 96.1
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 3.5e-156 556.2 307 96.1
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 3.5e-156 556.2 307 96.1
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 7.9e-140 501.9 311 85.5
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 2.6e-138 496.9 308 85.4
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 6.9e-136 488.8 307 86.3
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.3e-123 447.2 312 77.6
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.7e-121 441.0 320 76.2
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.7e-118 431.0 312 75.3
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 2.9e-118 430.3 316 74.7
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 5.0e-118 429.5 310 74.5
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 3.6e-108 396.7 318 68.9
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.9e-101 374.4 310 65.2
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.6e-94 349.0 314 62.7
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.5e-93 348.2 311 61.4
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.2e-92 345.1 327 59.3
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 4.7e-92 343.2 324 59.9
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 3.1e-91 340.5 314 62.1
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 3.1e-91 340.5 326 58.0
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 4.0e-91 340.1 306 62.7
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 5.2e-91 339.7 311 61.1
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 6.8e-91 339.3 250 70.0
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.2e-90 338.6 247 70.0
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.7e-89 334.7 307 59.9
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.7e-89 334.7 311 60.5
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 2.2e-89 334.3 302 61.3
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 6.4e-89 332.8 311 60.5
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 8.3e-89 332.4 312 59.9
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.1e-88 332.0 293 62.1
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.1e-88 332.0 304 60.5
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.1e-88 332.0 249 69.9
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 4.1e-88 330.1 312 59.9
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 4.1e-88 330.1 311 59.5
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.7e-87 327.4 247 69.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.7e-87 327.4 316 59.2
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.5e-87 327.0 313 60.1
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 6.0e-87 326.2 311 59.2
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.0e-86 325.5 311 56.6
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 2.3e-86 324.3 315 59.0
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.0e-86 323.2 307 59.3
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.0e-86 323.2 307 59.3
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.1e-85 322.0 260 65.4
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.1e-85 322.0 306 57.8
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.5e-85 321.6 243 67.5
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.5e-85 320.9 235 70.6
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 4.3e-85 320.1 310 57.7
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 5.6e-85 319.7 243 66.7
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 5.6e-85 319.7 247 66.0
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 7.3e-85 319.3 242 67.4
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 7.3e-85 319.3 306 57.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.6e-84 318.2 311 56.6
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.8e-84 317.4 303 56.1
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 8.1e-84 315.8 239 67.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 3.1e-83 313.9 311 56.6
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 4.0e-83 313.5 309 56.6
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 5.2e-83 313.2 320 55.9
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 8.9e-83 312.4 249 65.9
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.2e-82 312.0 312 56.1
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.2e-82 312.0 308 55.5
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 1.5e-82 311.6 308 56.5
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.6e-82 310.8 248 63.7
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 2.6e-82 310.8 299 57.5
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.9e-82 308.9 247 63.6
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 9.9e-82 308.9 247 63.6
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 1.3e-81 308.5 243 65.4
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.7e-81 308.1 303 56.8
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 2.9e-81 307.4 305 55.4
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.1e-80 305.4 310 55.8
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.4e-80 305.1 304 56.2
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.9e-80 304.7 244 63.1
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 2.4e-80 304.3 235 66.8
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.4e-80 304.3 265 61.5
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 5.4e-80 303.1 306 55.2
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.1e-80 302.8 266 59.4
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.2e-79 302.0 307 54.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.2e-79 302.0 244 61.9
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 4.6e-79 300.1 252 61.5
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 7.8e-79 299.3 304 54.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 1.3e-78 298.5 249 60.2
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 1.9e-77 294.7 322 52.2
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.6e-76 291.6 308 52.9
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.6e-76 291.6 307 54.4
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 1.4e-75 288.5 304 52.6
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 2.4e-75 287.7 254 59.8
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 2.4e-75 287.7 267 58.8
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 4.0e-75 287.0 245 60.4
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 6.8e-75 286.2 304 53.6
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.0e-74 284.6 201 69.7
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 2.0e-74 284.6 276 58.7
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 9.9e-74 282.3 317 53.9
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.2e-71 275.4 304 51.0
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 7.8e-71 272.7 272 57.4
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.3e-70 271.9 275 57.1
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.1e-69 268.9 266 55.3
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 2.5e-69 267.7 289 52.6
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.2e-66 258.8 291 49.5
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 8.1e-60 236.1 156 76.9
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 6.0e-55 219.9 172 68.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 8.4e-49 199.5 241 51.0
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 6.0e-47 193.4 151 63.6
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.2e-41 174.9 305 38.0
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 5.7e-37 160.2 199 46.2
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 2.7e-31 141.4 183 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 2.1e-23 115.2 182 35.2
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 2.7e-23 114.8 293 33.4
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 7.9e-23 113.2 204 35.3
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.4e-19 102.4 240 32.9
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 2.4e-19 101.7 173 35.8
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.0e-09 69.7 59 59.3
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 2.1e-07 62.0 216 25.9
Nn6g35263 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.8e-06 58.9 181 28.7
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 4.0e-06 57.8 104 30.8


User provided reference genes

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