Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.1e-281 971.1 474 100.0
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 5.7e-259 897.1 457 95.6
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 7.3e-254 880.2 473 92.6
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 3.3e-246 854.7 466 89.5
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 9.5e-246 853.2 468 88.5
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 9.5e-246 853.2 468 88.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 8.9e-244 846.7 471 87.9
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 8.9e-244 846.7 464 88.8
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 3.4e-243 844.7 464 87.9
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 4.4e-243 844.3 455 89.5
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 4.4e-243 844.3 455 89.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 6.4e-242 840.5 457 88.4
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 8.6e-239 830.1 457 88.0
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 4.3e-238 827.8 462 87.0
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 4.7e-237 824.3 466 85.4
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 8.9e-236 820.1 456 87.3
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 4.9e-234 814.3 454 86.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 2.3e-231 805.4 475 82.9
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 5.1e-231 804.3 459 85.2
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 2.0e-227 792.3 466 80.7
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 4.4e-227 791.2 485 80.4
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 4.2e-217 758.1 451 84.7
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 6.6e-215 750.7 461 76.1
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 1.5e-214 749.6 452 77.0
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 9.6e-214 746.9 450 77.3
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 8.1e-213 743.8 450 76.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 1.4e-212 743.0 450 77.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 4.9e-210 734.6 450 76.0
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 8.4e-210 733.8 450 76.0
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 1.9e-209 732.6 448 76.8
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 2.4e-209 732.3 450 75.6
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 7.1e-209 730.7 450 76.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 3.5e-208 728.4 450 75.1
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 3.5e-208 728.4 453 74.2
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 1.3e-207 726.5 456 74.8
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.8e-207 726.1 448 75.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 2.3e-207 725.7 450 74.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 3.0e-207 725.3 450 75.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 8.7e-207 723.8 449 76.4
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 1.5e-206 723.0 448 76.1
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 5.6e-206 721.1 447 75.6
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 3.6e-205 718.4 452 73.9
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 6.2e-205 717.6 447 74.9
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.4e-204 716.5 448 76.3
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 1.8e-204 716.1 449 75.1
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.4e-204 715.7 472 78.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 2.4e-204 715.7 450 74.4
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 2.4e-204 715.7 447 76.1
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 4.0e-204 714.9 449 74.8
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 9.0e-204 713.8 450 73.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 9.0e-204 713.8 450 75.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 1.2e-203 713.4 448 75.9
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 1.2e-203 713.4 478 71.8
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 1.5e-203 713.0 450 73.3
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.5e-203 713.0 448 75.7
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.5e-203 713.0 448 74.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 2.6e-203 712.2 447 75.6
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 2.6e-203 712.2 450 73.8
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.5e-203 711.4 455 72.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 5.8e-203 711.1 453 73.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 5.8e-203 711.1 452 73.5
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 1.3e-202 709.9 446 75.1
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 1.7e-202 709.5 453 73.7
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 2.2e-202 709.1 446 74.9
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 3.8e-202 708.4 447 74.3
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 6.4e-202 707.6 450 72.7
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 1.1e-201 706.8 450 72.4
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 1.4e-201 706.4 445 75.1
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 1.4e-201 706.4 449 73.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 3.2e-201 705.3 446 74.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 3.2e-201 705.3 449 73.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 9.3e-201 703.7 450 72.9
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 9.3e-201 703.7 450 73.6
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 1.2e-200 703.4 451 73.2
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 1.6e-200 703.0 456 72.8
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 2.1e-200 702.6 448 74.1
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 6.0e-200 701.0 448 70.3
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 6.0e-200 701.0 450 72.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 1.0e-199 700.3 446 73.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.8e-199 699.5 447 72.9
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 1.8e-199 699.5 450 72.0
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 3.0e-199 698.7 447 72.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 1.1e-198 696.8 450 72.9
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 1.1e-198 696.8 447 72.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 2.5e-198 695.7 448 72.1
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.5e-198 695.7 447 72.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 3.3e-198 695.3 455 72.7
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 4.3e-198 694.9 446 73.5
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 3.7e-197 691.8 512 65.2
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.1e-196 690.3 447 71.4
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 1.1e-196 690.3 446 72.9
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 1.4e-196 689.9 446 71.1
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 2.6e-195 685.6 448 73.0
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 2.6e-195 685.6 447 72.3
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 2.6e-195 685.6 449 72.2
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 2.9e-194 682.2 450 70.2
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 8.4e-194 680.6 453 70.9
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 3.2e-193 678.7 448 71.0
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 5.1e-191 671.4 447 68.5
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 1.4e-188 663.3 527 62.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.5e-187 659.8 447 67.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 5.5e-185 651.4 447 70.0
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.6e-184 648.7 469 65.0
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 5.1e-183 644.8 448 67.6
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 1.1e-180 637.1 448 68.8
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.1e-177 627.1 452 65.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 1.4e-177 626.7 449 67.9
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 3.2e-177 625.5 448 66.7
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.9e-169 599.7 369 76.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 5.5e-161 571.6 448 61.6
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 5.9e-155 551.6 345 74.2
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 2.5e-153 546.2 450 60.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 4.2e-153 545.4 455 57.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 8.8e-151 537.7 366 67.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.6e-150 536.2 366 68.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 5.5e-145 518.5 450 54.7
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 3.3e-137 492.7 281 88.3
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 4.7e-136 488.8 447 53.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.2e-108 396.4 271 70.1
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 5.1e-106 389.0 238 79.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.2e-104 382.1 285 64.9
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.2e-94 351.3 242 71.1
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 3.4e-94 349.7 215 78.6
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 3.4e-94 349.7 265 66.8
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.5e-91 339.7 235 72.3
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 4.8e-80 302.8 505 34.9
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 3.4e-78 296.6 182 69.8
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 3.2e-76 290.0 199 71.9
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.2e-69 267.3 164 69.5
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 8.2e-64 248.8 155 74.2
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.8e-39 167.9 122 62.3
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 5.5e-28 129.8 83 68.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.3e-24 118.6 85 63.5
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.1e-23 113.6 83 57.8
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.2e-22 112.1 85 61.2
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.0e-18 99.0 102 50.0
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.3e-18 97.8 55 80.0
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 8.9e-18 95.9 81 55.6
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.6e-17 94.4 71 56.3
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 5.8e-17 93.2 58 67.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.7e-14 84.3 83 45.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.7e-13 81.6 74 55.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.5e-12 77.8 56 57.1
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.8e-10 71.6 74 50.0


User provided reference genes

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