Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p59700 Brassica napus HOM05D003245 ORTHO05D004125 2.0e-81 305.8 172 100.0
BraA01t00734Z Brassica rapa HOM05D003245 ORTHO05D004125 8.7e-56 220.7 186 74.7
AL7G21890 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 2.5e-55 219.2 185 75.1
C03p88780 Brassica napus HOM05D003245 ORTHO05D004125 2.5e-55 219.2 186 74.2
BcaC01g01161 Brassica carinata HOM05D003245 ORTHO05D004125 3.3e-55 218.8 186 74.2
A08p19320 Brassica napus HOM05D003245 ORTHO05D004125 3.3e-55 218.8 186 74.2
BolC3t21189H Brassica oleracea HOM05D003245 ORTHO05D004125 3.3e-55 218.8 186 74.2
Carub.0007s1035 Capsella rubella HOM05D003245 ORTHO05D004125 3.3e-55 218.8 185 74.6
BcaB03g12640 Brassica carinata HOM05D003245 ORTHO05D004125 5.6e-55 218.0 185 74.6
BcaC09g51810 Brassica carinata HOM05D003245 ORTHO05D004125 5.6e-55 218.0 186 74.2
C01p08790 Brassica napus HOM05D003245 ORTHO05D004125 5.6e-55 218.0 186 74.2
BolC1t00869H Brassica oleracea HOM05D003245 ORTHO05D004125 5.6e-55 218.0 186 74.2
BraA08t33893Z Brassica rapa HOM05D003245 ORTHO05D004125 5.6e-55 218.0 185 74.6
CARHR238170 Cardamine hirsuta HOM05D003245 ORTHO05D004125 9.6e-55 217.2 185 74.6
Thhalv10025913m.g Eutrema salsugineum HOM05D003245 ORTHO05D004125 9.6e-55 217.2 185 74.6
Sp7g28140 Schrenkiella parvula HOM05D003245 ORTHO05D004125 9.6e-55 217.2 185 74.6
AT4G30260 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.3e-54 216.9 185 74.1
BcaNung03004 Brassica carinata HOM05D003245 ORTHO05D004125 1.3e-54 216.9 185 74.1
Sp3g32300 Schrenkiella parvula HOM05D003245 ORTHO05D004125 1.3e-54 216.9 185 74.6
A01p07880 Brassica napus HOM05D003245 ORTHO05D004125 1.6e-54 216.5 185 74.6
AL3G53110 Arabidopsis lyrata HOM05D003245 ORTHO05D004125 6.2e-54 214.5 184 73.9
AT2G18840 Arabidopsis thaliana HOM05D003245 ORTHO05D004125 1.4e-53 213.4 184 73.4
Carub.0003s3307 Capsella rubella HOM05D003245 ORTHO05D004125 1.4e-53 213.4 184 73.4
CARHR109400 Cardamine hirsuta HOM05D003245 ORTHO05D004125 1.4e-53 213.4 184 73.4
TAR383G0562 Trochodendron aralioides HOM05D003245 ORTHO05D004125 1.4e-53 213.4 185 71.9
Gohir.A05G113700 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.8e-53 213.0 185 71.4
Aa31LG8G15930 Aethionema arabicum HOM05D003245 ORTHO05D004125 2.4e-53 212.6 184 72.8
Lalb_Chr07g0180421 Lupinus albus HOM05D003245 ORTHO05D004125 2.4e-53 212.6 185 71.9
PSO541G0246 Papaver somniferum HOM05D003245 ORTHO05D004125 3.1e-53 212.2 185 71.4
PSO675G6578 Papaver somniferum HOM05D003245 ORTHO05D004125 3.1e-53 212.2 185 71.4
Zm00001eb146670 Zea mays HOM05D003245 ORTHO05D004125 3.1e-53 212.2 185 70.3
THA.LOC104819980 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 4.0e-53 211.8 185 72.4
Cpa.g.sc95.57 Carica papaya HOM05D003245 ORTHO05D004125 5.3e-53 211.5 185 71.4
Cfa013513 Carpinus fangiana HOM05D003245 ORTHO05D004125 5.3e-53 211.5 185 72.4
Haze_22109 Corylus avellana HOM05D003245 ORTHO05D004125 5.3e-53 211.5 185 72.4
MELO3C005378.2 Cucumis melo HOM05D003245 ORTHO05D004125 5.3e-53 211.5 185 71.4
MD13G1256000 Malus domestica HOM05D003245 ORTHO05D004125 5.3e-53 211.5 185 71.4
Ciclev10009141m.g Citrus clementina HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 71.4
CsaV3_5G005750 Cucumis sativus L. HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 70.8
Os01g0867700 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 70.8
Potri.018G093800 Populus trichocarpa HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 71.4
Prupe.1G086600 Prunus persica HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 70.8
QL02p097606 Quercus lobata HOM05D003245 ORTHO05D004125 6.9e-53 211.1 184 72.3
THA.LOC104803937 Tarenaya hassleriana HOM05D003245 ORTHO05D004125 6.9e-53 211.1 185 70.8
TWI12G0425 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 9.0e-53 210.7 185 71.9
CANSAT11G2281 Cannabis sativa HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 72.4
Dinv41253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 71.9
FvH4_4g09840 Fragaria vesca HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
FAN12G1523 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
FAN12G3343 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
FAN22G0867 Fragaria x ananassa HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
Gohir.D05G114100 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
Gorai.009G118100 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
RcHm_v2.0_Chr4g0402611 Rosa chinensis HOM05D003245 ORTHO05D004125 1.2e-52 210.3 185 70.8
AUR62040631 Chenopodium quinoa HOM05D003245 ORTHO05D004125 1.5e-52 209.9 185 71.4
Duzib192G0054 Durio zibethinus HOM05D003245 ORTHO05D004125 1.5e-52 209.9 185 71.4
Duzib235G0677 Durio zibethinus HOM05D003245 ORTHO05D004125 1.5e-52 209.9 185 71.4
Thecc.06G060900 Theobroma cacao HOM05D003245 ORTHO05D004125 1.5e-52 209.9 185 71.4
Actinidia35994 Actinidia chinensis HOM05D003245 ORTHO05D004125 2.0e-52 209.5 185 71.9
EL10Ac8g19425 Beta vulgaris HOM05D003245 ORTHO05D004125 2.6e-52 209.1 185 71.4
Sed0003509 Sechium edule HOM05D003245 ORTHO05D004125 2.6e-52 209.1 185 70.8
ATR0580G426 Amborella trichopoda HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 71.4
CiPaw.08G036800 Carya illinoinensis HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 71.4
Dinv42729 Davidia involucrata HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 71.4
Dinv43372 Davidia involucrata HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 71.4
MD13G1256300 Malus domestica HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 70.8
Manes.14G150500 Manihot esculenta HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 71.4
Sabra18G0080700 Salix brachista HOM05D003245 ORTHO05D004125 4.5e-52 208.4 185 70.3
Ca_21218_v3 Cicer arietinum L. HOM05D003245 ORTHO05D004125 5.8e-52 208.0 185 71.4
FAN07G1981 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.8e-52 208.0 184 70.7
Lj4g0022126 Lotus japonicus HOM05D003245 ORTHO05D004125 5.8e-52 208.0 185 71.4
Cc06_g13310 Coffea canephora HOM05D003245 ORTHO05D004125 7.6e-52 207.6 185 71.4
Nitab4.5_0004307g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 7.6e-52 207.6 185 70.8
Peaxi162Scf00231g00812 Petunia axillaris HOM05D003245 ORTHO05D004125 7.6e-52 207.6 185 70.8
TPR.G5416 Trifolium pratense HOM05D003245 ORTHO05D004125 7.6e-52 207.6 185 71.4
GSVIVG01029199001 Vitis vinifera HOM05D003245 ORTHO05D004125 7.6e-52 207.6 185 70.8
Aqoxy1G01965 Aquilegia oxysepala HOM05D003245 ORTHO05D004125 9.9e-52 207.2 185 70.8
Hund22399 Selenicereus undatus HOM05D003245 ORTHO05D004125 9.9e-52 207.2 184 69.6
Solyc07g018220.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 9.9e-52 207.2 185 71.4
PGSC0003DMG400002422 Solanum tuberosum HOM05D003245 ORTHO05D004125 9.9e-52 207.2 185 71.4
PGSC0003DMG401002421 Solanum tuberosum HOM05D003245 ORTHO05D004125 9.9e-52 207.2 185 71.4
CAN.G5.10 Capsicum annuum HOM05D003245 ORTHO05D004125 1.3e-51 206.8 185 70.8
HanXRQChr09g0254481 Helianthus annuus HOM05D003245 ORTHO05D004125 1.3e-51 206.8 185 70.8
Phvul.003G146500 Phaseolus vulgaris HOM05D003245 ORTHO05D004125 1.3e-51 206.8 185 70.8
Solyc07g018210.3 Solanum lycopersicum HOM05D003245 ORTHO05D004125 1.3e-51 206.8 185 70.8
VMungo1215G1658 Vigna mungo HOM05D003245 ORTHO05D004125 1.3e-51 206.8 185 70.8
Lalb_Chr12g0199351 Lupinus albus HOM05D003245 ORTHO05D004125 1.7e-51 206.5 185 70.8
arahy.Tifrunner.gnm1.ann1.6TSM6Q Arachis hypogaea HOM05D003245 ORTHO05D004125 2.2e-51 206.1 185 70.3
arahy.Tifrunner.gnm1.ann1.LWG93W Arachis hypogaea HOM05D003245 ORTHO05D004125 2.2e-51 206.1 185 70.3
PGR102G0922 Punica granatum HOM05D003245 ORTHO05D004125 2.9e-51 205.7 185 71.4
Rhsim01G0005500 Rhododendron simsii HOM05D003245 ORTHO05D004125 2.9e-51 205.7 185 73.0
CiPaw.07G191800 Carya illinoinensis HOM05D003245 ORTHO05D004125 3.8e-51 205.3 185 71.4
Sabra06G0130400 Salix brachista HOM05D003245 ORTHO05D004125 3.8e-51 205.3 185 70.8
vmacro13120 Vaccinium macrocarpon HOM05D003245 ORTHO05D004125 3.8e-51 205.3 185 70.3
Glyma.13G096100 Glycine max HOM05D003245 ORTHO05D004125 4.9e-51 204.9 185 70.3
Medtr4g128290 Medicago truncatula HOM05D003245 ORTHO05D004125 4.9e-51 204.9 185 70.3
Sopen07g007320 Solanum pennellii HOM05D003245 ORTHO05D004125 4.9e-51 204.9 184 71.2
Sopen07g007330 Solanum pennellii HOM05D003245 ORTHO05D004125 4.9e-51 204.9 184 71.2
CAN.G32.5 Capsicum annuum HOM05D003245 ORTHO05D004125 6.4e-51 204.5 185 70.3
TWI12G0523 Tripterygium wilfordii HOM05D003245 ORTHO05D004125 6.4e-51 204.5 185 70.3
TAR626G1505 Trochodendron aralioides HOM05D003245 ORTHO05D004125 6.4e-51 204.5 185 70.3
Atru.chr7.659 Acer truncatum HOM05D003245 ORTHO05D004125 8.4e-51 204.1 184 70.1
CSS0017554 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 8.4e-51 204.1 185 70.3
Migut.K00245 Erythranthe guttata HOM05D003245 ORTHO05D004125 8.4e-51 204.1 185 69.7
Hma1.2p1_2478F.1_g322920 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 8.4e-51 204.1 185 69.2
Potri.006G169200 Populus trichocarpa HOM05D003245 ORTHO05D004125 8.4e-51 204.1 185 70.3
HanXRQChr09g0245001 Helianthus annuus HOM05D003245 ORTHO05D004125 1.4e-50 203.4 185 69.7
Lj7A472T61 Lonicera japonica HOM05D003245 ORTHO05D004125 1.4e-50 203.4 185 69.2
ECA240G1971 Erigeron canadensis HOM05D003245 ORTHO05D004125 1.9e-50 203.0 185 69.7
Lsat_1_v5_gn_7_54500 Lactuca sativa HOM05D003245 ORTHO05D004125 3.2e-50 202.2 183 69.4
Ah.08g212150 Amaranthus hybridus HOM05D003245 ORTHO05D004125 4.2e-50 201.8 185 69.2
SGA_v2.0_scaffold66G22455 Striga asiatica HOM05D003245 ORTHO05D004125 4.2e-50 201.8 185 68.6
Gohir.D10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 5.4e-50 201.4 185 70.3
Gorai.011G003600 Gossypium raimondii HOM05D003245 ORTHO05D004125 5.4e-50 201.4 185 70.3
MSTRG.19702 Avicennia marina HOM05D003245 ORTHO05D004125 9.3e-50 200.7 184 69.0
ECA236G4509 Erigeron canadensis HOM05D003245 ORTHO05D004125 9.3e-50 200.7 185 69.7
Duzib160G0168 Durio zibethinus HOM05D003245 ORTHO05D004125 2.7e-49 199.1 185 69.2
CDE02G4007 Ceratophyllum demersum HOM05D003245 ORTHO05D004125 6.0e-49 198.0 185 68.1
ClCG01G005520 Citrullus lanatus HOM05D003245 ORTHO05D004125 6.0e-49 198.0 228 59.6
Hma1.2p1_1710F.1_g298640 Hydrangea macrophylla HOM05D003245 ORTHO05D004125 7.9e-49 197.6 185 69.2
Lsat_1_v5_gn_8_67041 Lactuca sativa HOM05D003245 ORTHO05D004125 7.9e-49 197.6 185 67.0
Os05g0437500 Oryza sativa ssp. japonica HOM05D003245 ORTHO05D004125 7.9e-49 197.6 185 69.2
Gohir.A10G003200 Gossypium hirsutum HOM05D003245 ORTHO05D004125 1.3e-48 196.8 185 69.2
MSTRG.6209 Avicennia marina HOM05D003245 ORTHO05D004125 3.0e-48 195.7 182 68.7
Zm00001eb289090 Zea mays HOM05D003245 ORTHO05D004125 8.7e-48 194.1 185 66.5
MBI14_g17360_MAGBIO Magnolia biondii HOM05D003245 ORTHO05D004125 3.3e-47 192.2 244 54.5
SEGI_27058 Sequoiadendron giganteum HOM05D003245 ORTHO05D004125 3.3e-47 192.2 185 65.4
unitig_8.g3424 Utricularia gibba HOM05D003245 ORTHO05D004125 7.4e-47 191.0 183 66.7
CSS0020996 Camellia sinensis var. sinensis HOM05D003245 ORTHO05D004125 1.6e-46 189.9 195 63.6
HanXRQChr12g0365401 Helianthus annuus HOM05D003245 ORTHO05D004125 1.6e-46 189.9 185 64.3
MSTRG.26224 Avicennia marina HOM05D003245 ORTHO05D004125 4.8e-46 188.3 185 64.3
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 4.8e-46 188.3 172 68.6
Glyma.17G064000 Glycine max HOM05D003245 ORTHO05D004125 8.1e-46 187.6 172 69.2
Eucgr.C02287 Eucalyptus grandis HOM05D003245 ORTHO05D004125 9.9e-44 180.6 113 91.2
SalBow1G7127 Salvia bowleyana HOM05D003245 ORTHO05D004125 4.9e-43 178.3 180 62.8
Nn2g12708 Nelumbo nucifera HOM05D003245 ORTHO05D004125 3.2e-42 175.6 113 87.6
Lj9C686G6 Lonicera japonica HOM05D003245 ORTHO05D004125 9.3e-42 174.1 240 52.5
MBI16_g35929_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.2e-41 173.7 170 65.3
Gorai.005G122000 Gossypium raimondii HOM05D003245 ORTHO05D004125 1.0e-40 170.6 113 86.7
Dinv23253 Davidia involucrata HOM05D003245 ORTHO05D004125 1.3e-40 170.2 183 62.8
HPP92_003207 Vanilla planifolia HOM05D003245 ORTHO05D004125 8.7e-40 167.5 171 63.2
SalBow6G1711 Salvia bowleyana HOM05D003245 ORTHO05D004125 2.1e-38 162.9 180 59.4
Manes.06G024000 Manihot esculenta HOM05D003245 ORTHO05D004125 1.4e-37 160.2 171 61.4
Nitab4.5_0007820g0010 Nicotiana tabacum HOM05D003245 ORTHO05D004125 1.4e-37 160.2 136 72.8
GSVIVG01016111001 Vitis vinifera HOM05D003245 ORTHO05D004125 3.1e-37 159.1 182 58.2
Psat4g011760 Pisum sativum HOM05D003245 ORTHO05D004125 6.9e-37 157.9 117 80.3
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 1.2e-36 157.1 190 58.4
Oeu056516.1 Olea europaea HOM05D002774 ORTHO05D000116 1.2e-36 157.1 102 85.3
CBR_g23822 Chara braunii HOM05D003245 ORTHO05D004125 5.8e-36 154.8 184 54.3
HPP92_001091 Vanilla planifolia HOM05D003245 ORTHO05D004125 2.9e-35 152.5 155 64.5
Actinidia04152 Actinidia chinensis HOM05D003245 ORTHO05D004125 4.9e-35 151.8 98 87.8
Mapoly0113s0010 Marchantia polymorpha HOM05D003245 ORTHO05D004125 1.4e-34 150.2 184 52.2
SMO146G0102 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 1.9e-34 149.8 182 53.8
Gohir.D02G107400 Gossypium hirsutum HOM05D003245 ORTHO05D004125 3.2e-34 149.1 104 82.7
SGA_v2.0_scaffold17G07907 Striga asiatica HOM05D003245 ORTHO05D004125 5.5e-34 148.3 259 44.8
Pp3c7_23160 Physcomitrium patens HOM05D003245 ORTHO05D004125 6.0e-33 144.8 182 51.6
Pp3c7_23220 Physcomitrium patens HOM05D003245 ORTHO05D004125 6.0e-33 144.8 182 51.6
Pp3c11_7990 Physcomitrium patens HOM05D003245 ORTHO05D004125 1.9e-31 139.8 185 50.8
SalBow6G0700 Salvia bowleyana HOM05D003245 ORTHO05D004125 1.9e-31 139.8 167 55.7
AUR62034052 Chenopodium quinoa HOM05D003245 ORTHO05D004125 2.5e-31 139.4 87 86.2
BcaNung00534 Brassica carinata HOM05D003245 ORTHO05D004125 1.1e-26 124.0 95 81.1
SMO364G0848 Selaginella moellendorffii HOM05D003245 ORTHO05D004125 1.4e-26 123.6 176 46.0
C07p57720 Brassica napus HOM05D003245 ORTHO05D004125 1.1e-23 114.0 127 59.8
BraA03t15022Z Brassica rapa HOM05D003245 ORTHO05D004125 7.4e-23 111.3 87 78.2
Sopen07g007360 Solanum pennellii HOM05D003245 ORTHO05D004125 2.8e-22 109.4 76 85.5
unitig_22.g6851 Utricularia gibba HOM05D003245 ORTHO05D004125 3.7e-22 109.0 117 62.4
RcHm_v2.0_Chr4g0439321 Rosa chinensis HOM05D003245 ORTHO05D004125 1.8e-21 106.7 75 77.3
Cre07.g326400 Chlamydomonas reinhardtii HOM05D003245 ORTHO05D004125 1.6e-17 93.6 172 40.7
PRCOL_00000817 Prasinoderma coloniale HOM05D003245 ORTHO05D004125 1.4e-16 90.5 196 37.2
FAN17G0462 Fragaria x ananassa HOM05D003245 ORTHO05D004125 5.1e-16 88.6 60 81.7
Gohir.A02G090301 Gossypium hirsutum HOM05D003245 ORTHO05D004125 4.4e-15 85.5 64 76.6
MCO01G262 Micromonas commoda HOM05D003245 ORTHO05D004125 3.1e-13 79.3 176 37.5
Sed0004345 Sechium edule HOM05D003245 ORTHO05D004125 2.9e-11 72.8 97 57.7
Zm00001eb366670 Zea mays HOM05D003245 ORTHO05D004125 6.5e-11 71.6 98 55.1
Sc18g0007470 Simmondsia chinensis HOM05D003245 ORTHO05D004125 1.4e-10 70.5 98 56.1
BolC7t46233H Brassica oleracea HOM05D003245 ORTHO05D004125 5.5e-10 68.6 60 71.7
SGA_v2.0_scaffold12G06064 Striga asiatica HOM05D003245 ORTHO05D004125 1.2e-09 67.4 98 54.1
Migut.J01473 Erythranthe guttata HOM05D003245 ORTHO05D004125 3.0e-08 62.8 92 52.2
BolC9t56073H Brassica oleracea HOM05D003245 ORTHO05D004125 5.7e-07 58.5 84 52.4
CDE04G1421 Ceratophyllum demersum HOM05D000126 ORTHO05D000085 8.2e-06 54.7 87 49.4
Nitab4.5_0007820g0020 Nicotiana tabacum HOM05D003245 ORTHO05D004125 8.2e-06 54.7 33 81.8
Oeu049685.1 Olea europaea HOM05D003245 ORTHO05D004125 8.2e-06 54.7 33 81.8


User provided reference genes

Program Settings