Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 6.1e-45 183.7 90 100.0
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 8.9e-20 100.1 49 100.0
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 8.9e-20 100.1 49 100.0
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 8.9e-20 100.1 49 100.0
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 2.0e-19 99.0 49 98.0
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 2.0e-19 99.0 49 98.0
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 2.0e-19 99.0 49 98.0
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 2.0e-19 99.0 49 98.0
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 2.0e-19 99.0 49 98.0
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 2.2e-18 95.5 49 93.9
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 3.8e-18 94.7 49 91.8
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 3.8e-18 94.7 49 91.8
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 4.9e-18 94.4 49 93.9
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 6.4e-18 94.0 49 91.8
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.1e-17 93.2 49 93.9
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 1.1e-17 93.2 49 93.9
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 2.4e-17 92.0 49 91.8
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 2.4e-17 92.0 49 91.8
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 4.2e-17 91.3 92 55.4
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 4.6e-16 87.8 59 67.8
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.3e-15 86.3 49 83.7
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.3e-15 86.3 49 83.7
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.3e-15 86.3 81 59.3
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 1.7e-15 85.9 49 79.6
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 2.3e-15 85.5 84 61.9
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 3.0e-15 85.1 49 81.6
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 3.0e-15 85.1 49 81.6
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 3.0e-15 85.1 49 81.6
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 3.0e-15 85.1 49 81.6
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.0e-15 85.1 51 80.4
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.0e-15 85.1 51 80.4
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.0e-15 85.1 49 83.7
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 3.9e-15 84.7 55 72.7
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 79.6
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 5.1e-15 84.3 49 81.6
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 6.6e-15 84.0 49 77.6
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 6.6e-15 84.0 49 79.6
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 8.7e-15 83.6 49 77.6
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 8.7e-15 83.6 49 79.6
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 8.7e-15 83.6 49 81.6
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 1.1e-14 83.2 49 81.6
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.1e-14 83.2 49 81.6
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.1e-14 83.2 49 81.6
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 1.1e-14 83.2 49 81.6
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 1.1e-14 83.2 49 79.6
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 77.6
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 79.6
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 77.6
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 1.5e-14 82.8 49 77.6
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.9e-14 82.4 50 76.0
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 75.5
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 1.9e-14 82.4 49 77.6
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 2.5e-14 82.0 49 73.5
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.5e-14 82.0 49 77.6
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 2.5e-14 82.0 49 75.5
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 2.5e-14 82.0 49 79.6
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 3.3e-14 81.6 49 77.6
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 3.3e-14 81.6 51 70.6
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 3.3e-14 81.6 49 73.5
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 3.3e-14 81.6 50 76.0
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 4.3e-14 81.3 50 78.0
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 4.3e-14 81.3 50 80.0
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 4.3e-14 81.3 49 77.6
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 4.3e-14 81.3 49 73.5
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 77.6
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 73.5
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 75.5
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 77.6
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 73.5
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 75.5
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.6e-14 80.9 49 77.6
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 73.5
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 77.6
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 71.4
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 75.5
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 75.5
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 75.5
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 73.5
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 73.5
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 7.3e-14 80.5 49 73.5
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 9.6e-14 80.1 49 77.6
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.2e-13 79.7 49 75.5
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 1.2e-13 79.7 49 75.5
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 1.6e-13 79.3 49 75.5
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.6e-13 79.3 49 73.5
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.1e-13 79.0 49 73.5
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.1e-13 79.0 49 73.5
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 2.1e-13 79.0 49 73.5
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 2.8e-13 78.6 49 69.4
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 3.6e-13 78.2 49 73.5
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 3.6e-13 78.2 49 71.4
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 4.7e-13 77.8 50 76.0
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 4.7e-13 77.8 50 72.0
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 4.7e-13 77.8 49 69.4
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.7e-13 77.8 49 75.5
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 4.7e-13 77.8 49 75.5
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 4.7e-13 77.8 49 75.5
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 6.2e-13 77.4 49 71.4
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 6.2e-13 77.4 49 71.4
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 8.1e-13 77.0 49 73.5
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 8.1e-13 77.0 49 73.5
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 8.1e-13 77.0 49 75.5
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-12 76.6 49 73.5
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-12 76.6 49 73.5
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.4e-12 76.3 49 71.4
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.4e-12 76.3 49 71.4
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.8e-12 75.9 49 69.4
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 1.8e-12 75.9 49 67.3
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.8e-12 75.9 49 67.3
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 1.8e-12 75.9 49 65.3
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.8e-12 75.9 49 71.4
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 2.4e-12 75.5 49 67.3
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 3.1e-12 75.1 49 69.4
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.1e-12 75.1 49 71.4
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 4.0e-12 74.7 49 67.3
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 4.0e-12 74.7 49 67.3
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 5.3e-12 74.3 49 71.4
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 5.3e-12 74.3 49 67.3
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 6.9e-12 73.9 49 65.3
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 9.0e-12 73.6 49 67.3
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 9.0e-12 73.6 49 69.4
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 9.0e-12 73.6 49 69.4
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 9.0e-12 73.6 49 69.4
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 1.2e-11 73.2 49 69.4
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.2e-11 73.2 49 69.4
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 1.5e-11 72.8 49 65.3
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.5e-11 72.8 49 67.3
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 2.0e-11 72.4 49 67.3
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.4e-11 71.6 49 67.3
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 3.4e-11 71.6 49 67.3
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 3.4e-11 71.6 51 70.6
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 4.4e-11 71.2 49 65.3
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 4.4e-11 71.2 49 65.3
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 5.8e-11 70.9 49 65.3
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 9.9e-11 70.1 49 61.2
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 1.3e-10 69.7 49 63.3
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 1.7e-10 69.3 51 64.7
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 2.1e-08 62.4 49 53.1
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.3e-07 59.7 76 43.4
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.7e-07 59.3 49 46.9
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 6.6e-07 57.4 37 75.7
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 1.5e-06 56.2 48 47.9
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 2.5e-06 55.5 49 44.9
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 7.3e-06 53.9 40 72.5


User provided reference genes

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