Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 2178.7 1145 100.0
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 2098.2 1161 96.1
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 2031.9 1158 94.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 2026.5 1154 94.0
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1926.8 1194 88.2
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1789.6 1202 79.5
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1776.9 1206 78.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1769.2 1206 78.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1755.0 1209 77.6
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1615.1 1206 72.4
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1609.3 946 87.6
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1416.0 1221 64.7
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1234.2 1190 58.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1226.8 1196 58.0
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1226.1 1196 58.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1215.3 1197 57.6
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1214.9 1179 58.6
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1213.0 1189 57.4
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1213.0 1278 55.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1206.0 1187 57.2
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1204.1 1066 60.7
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1203.3 1179 58.4
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1198.3 1150 57.7
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1197.6 1213 56.4
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1191.4 1186 56.2
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1191.0 1240 55.3
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1187.9 1210 55.4
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1184.9 1201 57.0
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1182.9 923 67.1
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1182.2 1179 57.8
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1181.0 960 64.4
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1177.2 923 66.7
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1165.6 930 66.3
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1159.8 942 65.3
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1154.8 1209 54.6
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1153.7 1166 56.3
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1152.1 1110 58.2
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1150.6 1243 53.4
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1144.8 1099 57.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1138.6 1157 56.5
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1137.1 1059 58.0
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1136.3 1203 54.1
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1130.5 1201 54.5
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1130.5 1183 54.8
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1130.2 1264 52.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1128.2 1055 58.6
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1123.2 1210 54.0
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1121.7 1210 53.2
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1121.3 1138 56.2
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1120.5 1215 53.3
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1119.0 1138 55.0
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1119.0 1109 56.2
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1118.2 922 62.9
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1117.4 1093 56.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1116.3 879 65.5
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1115.9 920 64.2
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1113.6 916 64.3
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 1068 57.6
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1093.6 1119 55.2
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1093.2 974 61.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1088.9 1059 57.8
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1078.9 1160 53.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.6e-311 1073.2 947 62.0
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.2e-310 1070.1 1185 53.2
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.8e-306 1056.2 1112 54.3
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 8.9e-306 1053.9 1182 52.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 9.8e-305 1050.4 922 60.2
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.8e-304 1048.9 1218 51.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 6.3e-304 1047.7 1050 56.1
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 3.1e-303 1045.4 1055 56.6
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 2.1e-299 1032.7 1234 49.2
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 2.1e-299 1032.7 625 84.3
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-299 1032.7 881 62.5
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.0e-299 1030.8 1213 50.4
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.3e-285 986.1 1084 51.8
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 3.3e-276 955.7 814 61.9
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-275 953.0 841 61.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 5.8e-273 944.9 859 59.7
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 1.4e-271 940.3 996 54.4
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.6e-265 919.5 867 57.4
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 7.1e-263 911.4 883 55.9
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 6.2e-259 898.3 1011 52.2
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.2e-256 889.8 833 57.4
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 3.2e-255 885.9 1140 48.0
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 7.1e-255 884.8 917 53.8
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 6.7e-253 878.2 906 56.7
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 3.3e-244 849.4 935 50.2
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 4.3e-244 849.0 965 49.3
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 6.0e-238 828.6 915 49.8
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 6.9e-234 815.1 690 62.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 2.2e-232 810.1 689 62.0
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-231 806.6 733 61.0
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 8.2e-227 791.6 1098 45.3
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.3e-226 788.9 907 49.1
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.0e-218 761.9 949 46.8
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 2.9e-216 756.5 586 67.7
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.6e-209 734.2 600 63.8
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 4.0e-181 639.8 499 67.7
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.4e-173 614.8 757 50.1
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.7e-161 573.9 1056 38.2
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 7.8e-161 572.4 470 62.1
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.9e-160 570.1 695 48.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.6e-153 548.1 635 51.0
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.4e-139 499.2 745 40.0
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 6.0e-137 493.0 399 64.9
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.0e-133 479.2 423 59.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.1e-109 401.0 422 52.6
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.2e-106 390.6 306 67.6
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 6.7e-104 383.3 481 47.8
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.4e-103 380.6 323 61.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 4.7e-89 334.0 379 47.8
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.9e-66 258.8 207 67.6
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.4e-64 252.7 214 64.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 3.0e-59 235.0 318 45.3
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 5.0e-59 234.2 198 62.1
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.8e-57 228.4 184 66.8
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.0e-55 222.2 227 51.1
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.7e-54 218.0 275 46.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 8.3e-54 216.9 196 57.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-53 215.7 748 28.7
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.1e-53 214.5 259 45.6
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-52 212.6 165 69.7
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-49 203.0 173 57.2
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.3e-46 193.0 705 26.7
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.7e-43 182.6 147 62.6
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.9e-43 181.4 202 54.0
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 6.6e-43 180.6 156 57.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 6.8e-40 170.6 748 25.7
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.5e-39 169.5 245 43.7
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.4e-38 164.1 240 42.5
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.9e-37 162.5 120 66.7
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.2e-37 161.8 126 62.7
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 4.2e-37 161.4 140 61.4
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 9.3e-37 160.2 724 25.1
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.2e-36 159.8 303 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.0e-35 156.8 764 23.6
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.0e-35 156.8 677 24.1
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.6e-34 151.0 732 24.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.6e-33 148.3 850 23.3
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-32 146.7 116 63.8
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-29 136.3 144 49.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.9e-26 125.9 771 23.7
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 6.4e-22 110.9 127 48.0
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-21 109.0 73 75.3
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 7.9e-20 104.0 105 47.6
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 2.3e-19 102.4 82 62.2
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 3.7e-17 95.1 69 68.1
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.7e-17 95.1 901 20.1
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.6e-15 89.0 773 21.3
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 5.8e-15 87.8 485 23.3
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 5.5e-13 81.3 694 24.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-12 79.3 125 36.8
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.1e-12 79.3 91 46.2
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.1e-10 73.6 92 40.2
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.3e-10 71.6 141 36.2
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 5.7e-10 71.2 303 26.1
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 2.8e-09 68.9 37 83.8
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.4e-08 65.9 450 22.9
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 6.9e-08 64.3 100 41.0
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 5.9e-07 61.2 82 42.7
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.9e-07 61.2 73 53.4


User provided reference genes

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