Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1199.9 680 100.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 0.0e+00 1125.2 680 93.2
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 0.0e+00 1119.4 680 93.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1109.0 680 92.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 0.0e+00 1108.6 683 92.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 9.6e-300 1033.1 681 88.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.3e-291 1006.1 683 84.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.4e-288 993.4 680 83.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 3.2e-287 991.5 680 84.1
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 4.6e-286 987.6 680 84.6
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 7.9e-286 986.9 680 83.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.3e-274 947.6 681 79.9
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 8.5e-272 940.3 685 82.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.0e-269 931.8 680 80.9
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-260 902.5 681 75.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.4e-258 895.6 683 77.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-236 823.5 556 84.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.0e-229 800.4 691 66.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 6.6e-216 754.6 693 67.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.3e-215 752.3 691 69.2
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.6e-204 716.1 709 62.1
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.8e-198 696.0 709 59.4
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.9e-187 659.4 702 62.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.3e-183 645.6 701 54.9
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.2e-178 629.4 702 60.5
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.1e-177 626.7 702 60.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.7e-177 626.3 702 60.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.9e-175 620.2 701 59.5
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-174 617.1 701 59.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.2e-174 615.1 701 59.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.5e-172 609.0 702 59.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.0e-171 607.8 700 58.0
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.5e-170 603.2 700 58.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.2e-170 602.8 698 57.6
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 5.5e-170 602.1 698 55.4
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 7.1e-170 601.7 699 55.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.0e-169 598.6 706 57.5
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.5e-167 593.2 699 55.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.0e-164 583.6 703 55.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.3e-163 580.9 694 54.3
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-158 563.9 704 55.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.9e-157 558.5 706 55.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.6e-156 556.6 704 49.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.7e-156 555.1 711 53.0
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.3e-155 554.3 709 55.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.5e-155 551.6 706 53.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.4e-154 550.8 700 53.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-154 549.3 708 54.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.4e-152 544.3 703 54.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-152 544.3 708 50.6
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-152 543.9 711 53.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-152 543.1 726 50.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.9e-152 542.7 706 53.8
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.1e-151 541.2 703 50.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.5e-151 540.8 713 51.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.6e-151 540.0 710 51.7
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 9.7e-151 538.1 700 53.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.3e-150 537.7 701 49.8
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.4e-149 534.3 703 54.1
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.4e-149 533.5 699 54.6
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 7.0e-149 531.9 708 52.8
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.2e-148 531.2 703 54.2
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.5e-148 530.8 703 54.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.0e-148 530.4 701 53.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.6e-148 530.0 714 50.7
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.4e-148 529.6 708 50.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.0e-147 528.1 697 54.4
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-147 527.3 757 45.6
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.2e-147 526.9 700 53.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 5.0e-147 525.8 705 49.6
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.1e-146 524.6 732 51.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 8.0e-145 518.5 703 52.5
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 6.7e-144 515.4 702 52.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.3e-142 511.1 701 50.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.3e-142 511.1 705 52.1
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.7e-142 510.8 708 49.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.2e-140 504.6 769 41.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.7e-139 500.7 696 52.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.8e-139 499.6 708 49.2
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 5.0e-139 499.2 708 51.1
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.5e-139 498.8 706 50.7
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.5e-139 498.4 708 48.0
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.5e-138 496.9 705 50.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.6e-137 494.2 705 50.6
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.7e-137 493.4 669 52.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.7e-137 492.7 693 51.1
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.8e-136 490.7 633 57.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.8e-136 490.7 695 49.6
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.3e-136 490.3 741 47.2
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.0e-136 490.0 728 49.9
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 7.5e-135 485.3 705 51.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 9.7e-135 485.0 712 51.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 9.7e-135 485.0 708 52.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.7e-134 483.0 710 52.3
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.7e-134 483.0 708 51.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.9e-130 470.7 643 54.6
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 5.2e-128 462.6 638 54.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.2e-124 451.4 698 49.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.6e-124 451.1 701 44.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.0e-120 436.4 702 49.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.7e-119 432.6 702 40.0
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.2e-118 430.6 712 47.1
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.9e-118 429.5 697 41.9
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.8e-117 427.6 693 43.4
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.5e-114 417.2 636 52.4
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.2e-113 414.8 705 40.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.2e-111 408.3 705 43.3
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 4.9e-110 402.9 474 58.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 9.2e-109 398.7 698 39.4
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-106 391.3 696 42.2
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.5e-106 390.6 536 44.8
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-98 364.8 627 49.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.2e-97 359.4 520 50.2
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-93 347.8 526 46.4
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-92 344.4 514 52.1
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.1e-84 317.8 533 47.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 7.3e-82 309.3 525 41.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 9.3e-77 292.4 460 41.1
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-74 285.0 531 36.2
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 9.0e-72 275.8 714 38.7
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 9.3e-69 265.8 421 48.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-66 258.1 277 60.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.5e-63 246.9 253 70.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.4e-61 241.9 134 90.3
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.4e-56 224.6 341 42.5
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.9e-56 223.0 316 50.6
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.0e-54 219.2 133 81.2
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.5e-54 216.5 479 34.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-53 215.7 462 36.1
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.1e-53 215.7 425 34.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.5e-47 195.3 131 73.3
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.4e-47 194.1 252 53.2
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 4.2e-45 187.2 700 29.9
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.3e-42 177.6 556 28.4
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 5.7e-42 176.8 122 77.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.0e-39 168.3 196 51.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.4e-37 162.2 271 46.1
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 7.9e-36 156.4 134 62.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 8.2e-33 146.4 125 59.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.5e-30 136.3 122 54.1
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 7.2e-29 133.3 188 48.4
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 2.0e-26 125.2 506 29.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 5.7e-26 123.6 129 47.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 9.7e-26 122.9 109 56.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.2e-25 121.7 157 54.1
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.0e-23 115.2 195 49.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.6e-23 114.8 142 59.2
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-20 104.8 98 58.2
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-18 99.0 94 57.4
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.7e-17 95.5 70 65.7
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.0e-15 88.6 284 28.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.8e-14 84.3 115 47.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-13 82.8 247 29.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.2e-13 80.9 40 92.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 4.2e-13 80.9 151 37.7
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-12 79.0 97 40.2
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-12 78.6 100 41.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-12 78.6 100 41.0
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.7e-12 78.2 97 41.2
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 3.6e-12 77.8 126 37.3
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-11 74.7 100 38.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-10 71.2 60 66.7
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-10 71.2 75 49.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-10 70.9 100 36.0
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 5.7e-10 70.5 257 26.5
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.7e-10 70.5 51 58.8
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-09 69.3 60 65.0
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-09 69.3 60 65.0
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-09 69.3 60 65.0
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-09 69.3 60 65.0
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-09 67.8 60 63.3
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.7e-09 67.8 69 55.1
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-09 66.6 100 35.0
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.4e-08 65.9 72 47.2
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-08 65.1 100 36.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.1e-08 64.3 100 36.0
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 2.0e-07 62.0 61 47.5
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.0e-06 57.4 39 59.0
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.0e-06 57.4 39 59.0


User provided reference genes

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