Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.4e-93 344.4 180 100.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.4e-93 344.4 180 100.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.4e-88 328.9 181 96.1
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-86 322.8 184 94.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-78 297.0 183 90.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 5.9e-71 271.2 189 82.5
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.8e-70 268.5 189 81.0
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 5.0e-70 268.1 189 82.0
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 4.2e-69 265.0 175 82.9
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.2e-68 263.5 189 81.0
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.7e-68 262.3 190 80.5
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.7e-68 262.3 190 80.5
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.7e-68 262.3 190 80.5
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 6.1e-68 261.2 189 79.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-67 260.4 190 80.0
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-67 258.8 191 78.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-67 258.8 191 78.0
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 6.7e-67 257.7 189 77.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.6e-60 236.5 142 84.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 3.6e-60 235.3 142 85.2
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.6e-60 235.3 146 82.9
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.1e-60 234.6 146 82.9
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 7.9e-60 234.2 142 84.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.8e-59 233.0 155 81.9
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.3e-59 232.6 148 81.8
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 5.1e-59 231.5 168 76.2
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.7e-59 231.1 137 86.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.1e-58 230.3 143 83.2
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 2.0e-58 229.6 143 83.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.0e-58 229.6 153 79.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 3.3e-58 228.8 148 79.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.3e-58 228.8 137 84.7
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 5.7e-58 228.0 186 68.3
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.7e-58 228.0 158 77.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 7.4e-58 227.6 152 78.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.4e-58 227.6 143 82.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.4e-58 227.6 143 82.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 9.7e-58 227.3 169 72.8
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.7e-58 227.3 156 77.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.3e-57 226.9 152 79.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.3e-57 226.9 163 73.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.3e-57 226.9 156 76.9
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.7e-57 226.5 156 76.9
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.2e-57 226.1 143 81.8
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 2.8e-57 225.7 137 84.7
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-57 225.7 143 81.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-57 225.7 143 81.1
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.7e-57 225.3 159 74.8
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.7e-57 225.3 151 78.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 3.7e-57 225.3 158 75.9
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 4.8e-57 224.9 155 78.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 6.3e-57 224.6 176 69.3
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 6.3e-57 224.6 140 82.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.3e-57 224.6 137 84.7
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 8.2e-57 224.2 143 78.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 8.2e-57 224.2 145 78.6
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 8.2e-57 224.2 142 81.7
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-56 223.8 143 79.0
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-56 223.8 143 79.0
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.4e-56 223.4 143 78.3
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.4e-56 223.4 136 84.6
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.4e-56 223.4 143 79.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.8e-56 223.0 143 81.1
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.4e-56 222.6 170 68.8
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.4e-56 222.6 155 72.9
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.4e-56 222.6 143 78.3
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.4e-56 222.6 143 81.1
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 3.1e-56 222.2 148 77.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.1e-56 222.2 143 81.1
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.1e-56 222.2 140 79.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 5.3e-56 221.5 158 72.8
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 5.3e-56 221.5 153 75.8
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.3e-56 221.5 159 72.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.9e-56 221.1 151 78.1
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.9e-56 221.1 151 78.1
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.9e-56 221.1 145 80.0
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-55 220.3 170 70.0
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.5e-55 219.9 137 83.9
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-55 219.5 196 64.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.0e-55 219.5 141 80.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.6e-55 219.2 143 77.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.6e-55 219.2 158 74.1
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.4e-55 218.8 143 77.6
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 3.4e-55 218.8 143 80.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.5e-55 218.4 151 77.5
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.5e-55 218.4 140 80.7
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 5.9e-55 218.0 151 76.2
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 7.7e-55 217.6 143 76.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.0e-54 217.2 159 71.7
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.0e-54 217.2 150 74.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.0e-54 217.2 125 88.0
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.3e-54 216.9 150 75.3
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.3e-54 216.9 143 79.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.3e-54 216.9 126 87.3
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.7e-54 216.5 159 72.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-54 216.5 143 79.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.7e-54 216.5 155 71.6
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.2e-54 216.1 144 75.7
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 6.5e-54 214.5 140 78.6
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 6.5e-54 214.5 154 75.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-53 213.8 196 63.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-53 213.8 128 86.7
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-53 213.4 193 66.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.9e-53 213.0 146 77.4
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.9e-53 213.0 146 77.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.9e-53 213.0 196 63.3
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.5e-53 212.6 143 77.6
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-53 212.6 127 84.3
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 3.2e-53 212.2 143 76.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.2e-53 211.8 143 74.1
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 9.4e-53 210.7 125 84.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-52 210.3 142 76.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.1e-52 209.5 127 81.1
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.7e-52 209.1 148 73.6
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 4.7e-52 208.4 192 60.4
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.1e-52 208.0 207 59.4
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 6.1e-52 208.0 175 66.9
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.9e-52 207.6 153 73.9
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-51 206.8 153 73.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.4e-51 206.8 155 72.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-51 206.5 153 73.9
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.9e-51 205.3 131 79.4
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.1e-50 203.8 142 70.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.7e-50 201.4 126 82.5
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 5.7e-50 201.4 142 70.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.3e-49 200.3 132 75.8
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.2e-49 199.5 150 70.0
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.8e-49 199.1 125 79.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.7e-49 198.7 124 82.3
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.4e-48 196.8 174 60.9
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 3.1e-48 195.7 138 73.2
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 5.3e-48 194.9 143 71.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.3e-48 194.9 142 67.6
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.3e-46 190.3 145 72.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-46 189.1 197 58.9
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.6e-44 182.2 143 72.0
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-42 177.2 191 55.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.8e-40 169.9 149 58.4
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.1e-40 169.1 111 78.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.2e-39 167.2 169 53.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-39 167.2 111 77.5
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.0e-39 166.4 113 76.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.7e-39 166.0 141 66.0
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.5e-39 165.6 177 53.7
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.0e-38 164.1 124 64.5
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 3.8e-38 162.2 97 89.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 3.8e-38 162.2 129 64.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.8e-38 162.2 149 57.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-37 160.6 115 74.8
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.4e-35 153.7 125 60.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.0e-35 152.5 148 56.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 6.8e-35 151.4 159 53.5
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.7e-33 145.6 78 94.9
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.3e-33 144.4 120 61.7
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.4e-32 143.7 150 58.0
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.6e-31 140.2 93 76.3
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.9e-31 138.3 107 60.7
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-29 133.7 108 62.0
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.0e-27 125.9 122 58.2
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 8.3e-25 117.9 69 84.1
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.3e-22 110.5 68 80.9
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.0e-22 108.6 68 79.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 5.6e-21 105.1 124 54.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 9.5e-21 104.4 124 54.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.6e-20 102.4 79 72.2
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-17 92.8 74 68.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 3.7e-17 92.4 58 81.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 8.3e-17 91.3 58 79.3
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.8e-16 90.1 83 57.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.4e-16 89.7 80 58.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.0e-16 88.2 75 58.7
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-15 87.4 47 85.1
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.5e-15 85.9 125 38.4
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.8e-12 76.3 69 66.7
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 8.3e-09 64.7 38 78.9
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.4e-08 62.0 55 56.4
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 9.2e-08 61.2 55 56.4
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.0e-07 58.5 55 54.5
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 5.0e-06 55.5 31 83.9


User provided reference genes

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