Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 7.4e-164 580.5 297 100.0
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 5.0e-136 488.0 283 87.6
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 1.4e-133 479.9 297 84.2
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 8.6e-128 460.7 289 84.8
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-94 350.5 309 67.0
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 1.6e-49 200.7 239 46.9
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 2.1e-49 200.3 233 48.1
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 2.3e-48 196.8 232 47.4
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 2.3e-48 196.8 232 47.4
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.1e-47 194.5 252 45.2
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 1.5e-47 194.1 239 46.4
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 2.6e-47 193.4 239 46.0
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 4.4e-47 192.6 232 47.0
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 4.4e-47 192.6 232 47.0
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 5.7e-47 192.2 232 47.0
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 7.4e-47 191.8 232 47.0
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 7.4e-47 191.8 232 47.0
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 9.7e-47 191.4 240 45.0
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 9.7e-47 191.4 232 47.0
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 2.2e-46 190.3 238 45.0
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.8e-46 189.9 232 47.0
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 3.7e-46 189.5 232 46.6
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 4.8e-46 189.1 249 45.0
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 8.2e-46 188.3 232 46.6
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 8.2e-46 188.3 249 44.6
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 8.2e-46 188.3 250 43.2
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 1.1e-45 188.0 248 44.0
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 1.4e-45 187.6 243 44.0
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.8e-45 187.2 243 44.0
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.8e-45 187.2 230 46.5
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 3.1e-45 186.4 243 44.0
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 3.1e-45 186.4 232 44.0
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.1e-45 186.0 251 44.2
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 4.1e-45 186.0 232 45.3
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 5.3e-45 185.7 232 45.3
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-45 185.7 233 47.6
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-45 185.7 233 47.6
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-45 185.7 233 47.6
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 5.3e-45 185.7 240 43.3
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 5.3e-45 185.7 241 43.6
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 7.0e-45 185.3 248 42.7
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.2e-44 184.5 236 44.1
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 1.6e-44 184.1 231 45.5
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 2.6e-44 183.3 248 42.3
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.6e-44 183.3 243 44.4
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 2.6e-44 183.3 243 44.4
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 3.5e-44 183.0 231 44.2
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 4.5e-44 182.6 239 44.4
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 5.9e-44 182.2 243 43.2
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 7.7e-44 181.8 245 42.9
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 7.7e-44 181.8 234 44.4
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 1.0e-43 181.4 233 43.8
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.3e-43 181.0 232 45.3
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.3e-43 181.0 232 44.4
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.2e-43 180.3 246 43.9
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 6.5e-43 178.7 238 43.3
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 6.5e-43 178.7 222 45.5
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 6.5e-43 178.7 225 43.6
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 6.5e-43 178.7 251 43.8
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 8.5e-43 178.3 249 43.0
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.5e-42 177.6 225 43.6
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 2.5e-42 176.8 268 40.7
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 2.5e-42 176.8 243 42.4
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 2.5e-42 176.8 238 42.9
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 3.2e-42 176.4 239 42.3
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 5.5e-42 175.6 249 41.8
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 5.5e-42 175.6 233 41.6
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 5.5e-42 175.6 232 44.0
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 5.5e-42 175.6 225 42.7
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 7.2e-42 175.3 229 44.5
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 7.2e-42 175.3 233 43.8
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 1.6e-41 174.1 225 43.6
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 1.6e-41 174.1 229 42.8
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 2.1e-41 173.7 239 42.3
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 2.1e-41 173.7 225 43.1
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 2.7e-41 173.3 254 39.8
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 2.7e-41 173.3 232 45.3
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.7e-41 173.3 223 43.5
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 3.6e-41 172.9 231 43.3
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 3.6e-41 172.9 232 41.8
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 6.1e-41 172.2 231 43.3
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 6.1e-41 172.2 239 41.0
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 8.0e-41 171.8 254 40.2
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 1.0e-40 171.4 276 39.9
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 1.0e-40 171.4 233 41.6
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 1.0e-40 171.4 230 42.6
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 1.4e-40 171.0 230 42.2
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 1.4e-40 171.0 231 42.0
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 2.3e-40 170.2 237 40.9
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 2.3e-40 170.2 233 40.8
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 2.3e-40 170.2 231 41.6
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 2.3e-40 170.2 237 41.4
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.0e-40 169.9 236 41.1
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 3.0e-40 169.9 230 43.0
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.0e-40 169.9 250 40.0
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.0e-40 169.5 240 42.1
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.0e-40 169.5 240 42.1
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 4.0e-40 169.5 249 41.4
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.2e-40 169.1 229 42.4
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 5.2e-40 169.1 230 41.7
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 6.8e-40 168.7 230 42.6
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 1.5e-39 167.5 248 39.9
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.5e-39 167.5 231 42.9
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.5e-39 167.5 243 41.2
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 2.6e-39 166.8 223 41.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 3.4e-39 166.4 271 39.1
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 7.5e-39 165.2 231 42.0
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 7.5e-39 165.2 230 40.4
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 7.5e-39 165.2 267 38.2
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 9.7e-39 164.9 237 40.1
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.7e-38 164.1 243 42.0
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.7e-38 164.1 231 41.1
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 2.2e-38 163.7 198 48.0
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 2.8e-38 163.3 232 40.5
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 2.8e-38 163.3 240 39.6
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.8e-38 162.5 269 38.3
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.1e-37 161.4 246 40.7
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 4.1e-37 159.5 239 40.2
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 9.1e-37 158.3 230 40.4
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.6e-36 157.5 220 41.8
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 7.7e-36 155.2 254 37.8
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.9e-35 153.3 231 39.4
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.5e-34 151.0 187 46.0
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 3.2e-34 149.8 236 38.1
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 3.2e-34 149.8 190 44.2
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 2.1e-33 147.1 245 36.7
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 8.0e-33 145.2 232 40.1
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.0e-32 144.8 251 38.2
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 1.3e-30 137.9 201 41.3
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 2.2e-30 137.1 232 37.9
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.2e-30 137.1 221 37.6
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 8.3e-30 135.2 290 33.4
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 2.4e-29 133.7 249 36.9
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.1e-29 132.9 187 41.7
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 5.4e-29 132.5 250 37.2
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.2e-28 131.3 144 48.6
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 1.2e-28 131.3 141 48.9
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.5e-28 129.8 198 40.4
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.9e-28 129.0 243 34.6
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 8.6e-27 125.2 151 47.7
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 9.5e-26 121.7 140 46.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.6e-25 120.9 207 34.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.4e-21 107.1 213 32.4
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 5.4e-21 105.9 259 32.0
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 8.6e-19 98.6 167 35.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.6e-17 93.2 231 31.6
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-17 92.8 215 34.0
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 4.4e-15 86.3 180 31.1
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 7.5e-15 85.5 158 36.1
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 7.5e-15 85.5 194 29.4
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 9.8e-15 85.1 92 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.7e-14 84.3 161 32.9
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.9e-14 83.6 98 45.9
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 2.4e-13 80.5 219 29.2
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 9.5e-10 68.6 206 28.6
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 8.0e-09 65.5 159 31.4
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 8.0e-09 65.5 133 33.8
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 1.1e-08 65.1 74 50.0
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 8.3e-06 55.5 75 37.3


User provided reference genes

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