Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p20200 Brassica napus HOM05D003530 ORTHO05D004017 1.8e-100 369.4 206 100.0
BraA03t11271Z Brassica rapa HOM05D003530 ORTHO05D004017 2.2e-58 229.6 139 91.4
BolC3t14763H Brassica oleracea HOM05D003530 ORTHO05D004017 4.4e-46 188.7 180 64.4
C03p23680 Brassica napus HOM05D003530 ORTHO05D004017 2.2e-45 186.4 180 63.9
BcaC01g05647 Brassica carinata HOM05D003530 ORTHO05D004017 4.7e-40 168.7 108 85.2
BcaB01g03824 Brassica carinata HOM05D003530 ORTHO05D004017 9.8e-38 161.0 139 67.6
AL5G17310 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 4.1e-36 155.6 153 68.0
AT3G27840 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 3.5e-35 152.5 153 62.7
Aa31LG9G1280 Aethionema arabicum HOM05D003530 ORTHO05D004017 5.2e-31 138.7 140 60.7
BraA09t35991Z Brassica rapa HOM05D003530 ORTHO05D004017 1.2e-30 137.5 140 59.3
BcaC06g30959 Brassica carinata HOM05D003530 ORTHO05D004017 2.6e-30 136.3 140 59.3
BcaC06g30958 Brassica carinata HOM05D003530 ORTHO05D004017 5.7e-30 135.2 140 58.6
Thhalv10004960m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 9.8e-30 134.4 140 60.0
Aa31LG2G4880 Aethionema arabicum HOM05D003530 ORTHO05D004017 1.3e-29 134.0 140 59.3
Thhalv10004964m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 1.3e-29 134.0 140 59.3
AT3G27850 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 4.9e-29 132.1 140 59.3
AL5G17260 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 8.3e-29 131.3 140 59.3
AT3G27830 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.1e-28 131.0 140 58.6
A09p03530 Brassica napus HOM05D003530 ORTHO05D004017 1.1e-28 131.0 150 60.0
CARHR149300 Cardamine hirsuta HOM05D003530 ORTHO05D004017 1.1e-28 131.0 140 59.3
CARHR149320 Cardamine hirsuta HOM05D003530 ORTHO05D004017 1.1e-28 131.0 140 59.3
BcaC06g33779 Brassica carinata HOM05D003530 ORTHO05D004017 2.4e-28 129.8 151 59.6
BcaC06g33780 Brassica carinata HOM05D003530 ORTHO05D004017 2.4e-28 129.8 151 59.6
BcaC06g33781 Brassica carinata HOM05D003530 ORTHO05D004017 2.4e-28 129.8 140 63.6
C07p37000 Brassica napus HOM05D003530 ORTHO05D004017 2.4e-28 129.8 140 63.6
C07p37010 Brassica napus HOM05D003530 ORTHO05D004017 2.4e-28 129.8 151 59.6
BolC7t44212H Brassica oleracea HOM05D003530 ORTHO05D004017 2.4e-28 129.8 140 63.6
BolC7t44213H Brassica oleracea HOM05D003530 ORTHO05D004017 2.4e-28 129.8 151 59.6
A06p40860 Brassica napus HOM05D003530 ORTHO05D004017 4.1e-28 129.0 140 62.9
BraA06t27008Z Brassica rapa HOM05D003530 ORTHO05D004017 4.1e-28 129.0 140 62.9
A06p40870 Brassica napus HOM05D003530 ORTHO05D004017 5.4e-28 128.6 140 62.9
BraA06t27009Z Brassica rapa HOM05D003530 ORTHO05D004017 5.4e-28 128.6 140 62.9
Sp2g16890 Schrenkiella parvula HOM05D003530 ORTHO05D004017 5.4e-28 128.6 141 64.5
Carub.0005s0635 Capsella rubella HOM05D003530 ORTHO05D004017 1.6e-27 127.1 140 60.0
Carub.0005s0637 Capsella rubella HOM05D003530 ORTHO05D004017 1.6e-27 127.1 140 60.0
AL5G17330 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 2.0e-27 126.7 140 60.7
PGR142G3122 Punica granatum HOM05D003530 ORTHO05D004017 2.0e-27 126.7 153 50.3
A02p35660 Brassica napus HOM05D003530 ORTHO05D004017 2.7e-27 126.3 140 61.4
BraA02t08568Z Brassica rapa HOM05D003530 ORTHO05D004017 2.7e-27 126.3 140 61.4
CiPaw.04G026100 Carya illinoinensis HOM05D003530 ORTHO05D004017 5.9e-27 125.2 146 52.1
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 7.8e-27 124.8 134 61.9
Cfa007412 Carpinus fangiana HOM05D003530 ORTHO05D004017 7.8e-27 124.8 140 58.6
CiPaw.03G039700 Carya illinoinensis HOM05D003530 ORTHO05D004017 1.3e-26 124.0 146 51.4
Haze_14690 Corylus avellana HOM05D003530 ORTHO05D004017 1.3e-26 124.0 187 48.7
CANSAT64G2824 Cannabis sativa HOM05D003530 ORTHO05D004017 2.9e-26 122.9 140 54.3
BcaC03g17492 Brassica carinata HOM05D003530 ORTHO05D004017 5.0e-26 122.1 140 59.3
C02p54500 Brassica napus HOM05D003530 ORTHO05D004017 5.0e-26 122.1 140 59.3
BolC2t11513H Brassica oleracea HOM05D003530 ORTHO05D004017 5.0e-26 122.1 140 59.3
QL02p075946 Quercus lobata HOM05D003530 ORTHO05D004017 5.0e-26 122.1 158 50.0
Sabra16G0225100 Salix brachista HOM05D003530 ORTHO05D004017 6.6e-26 121.7 161 49.1
FAN05G3949 Fragaria x ananassa HOM05D003530 ORTHO05D004017 8.6e-26 121.3 147 51.7
Sed0013614 Sechium edule HOM05D003530 ORTHO05D004017 8.6e-26 121.3 154 48.1
Sed0017530 Sechium edule HOM05D003530 ORTHO05D004017 8.6e-26 121.3 157 47.8
MELO3C021553.2 Cucumis melo HOM05D003530 ORTHO05D004017 1.5e-25 120.6 140 52.1
Manes.04G063300 Manihot esculenta HOM05D003530 ORTHO05D004017 1.9e-25 120.2 140 54.3
Manes.11G104900 Manihot esculenta HOM05D003530 ORTHO05D004017 1.9e-25 120.2 140 53.6
FvH4_6g50910 Fragaria vesca HOM05D003530 ORTHO05D004017 3.3e-25 119.4 140 52.1
FAN02G4450 Fragaria x ananassa HOM05D003530 ORTHO05D004017 3.3e-25 119.4 140 52.1
FAN14G3916 Fragaria x ananassa HOM05D003530 ORTHO05D004017 3.3e-25 119.4 140 52.1
MD17G1032900 Malus domestica HOM05D003530 ORTHO05D004017 3.3e-25 119.4 140 55.0
Potri.001G346100 Populus trichocarpa HOM05D003530 ORTHO05D004017 4.3e-25 119.0 161 48.4
FAN09G0266 Fragaria x ananassa HOM05D003530 ORTHO05D004017 9.5e-25 117.9 140 52.1
MD09G1031000 Malus domestica HOM05D003530 ORTHO05D004017 9.5e-25 117.9 140 52.1
Prupe.3G286600 Prunus persica HOM05D003530 ORTHO05D004017 1.2e-24 117.5 140 55.7
CsaV3_3G042510 Cucumis sativus L. HOM05D003530 ORTHO05D004017 2.1e-24 116.7 158 45.6
Sabra16G0225800 Salix brachista HOM05D003530 ORTHO05D004017 2.8e-24 116.3 161 46.6
COL.COLO4_29002 Corchorus olitorius HOM05D003530 ORTHO05D004017 8.0e-24 114.8 140 51.4
EL10Ac4g08602 Beta vulgaris HOM05D003530 ORTHO05D004017 1.0e-23 114.4 144 47.9
THA.LOC104805389 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 1.0e-23 114.4 200 47.5
Cpa.g.sc39.100 Carica papaya HOM05D003530 ORTHO05D004017 1.4e-23 114.0 142 52.1
Gohir.A08G009500 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.4e-23 114.0 181 43.6
Gohir.D08G019600 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.4e-23 114.0 181 43.1
Atru.chr6.2226 Acer truncatum HOM05D003530 ORTHO05D004017 1.8e-23 113.6 144 52.8
Atru.chr6.2319 Acer truncatum HOM05D003530 ORTHO05D004017 1.8e-23 113.6 144 52.8
Lj2g0009781 Lotus japonicus HOM05D003530 ORTHO05D004017 2.3e-23 113.2 153 48.4
Lalb_Chr17g0337251 Lupinus albus HOM05D003530 ORTHO05D004017 2.3e-23 113.2 140 48.6
PGR083G1866 Punica granatum HOM05D003530 ORTHO05D004017 2.3e-23 113.2 144 55.6
RcHm_v2.0_Chr2g0172281 Rosa chinensis HOM05D003530 ORTHO05D004017 2.3e-23 113.2 187 42.8
ClCG09G019050 Citrullus lanatus HOM05D003530 ORTHO05D004017 3.0e-23 112.8 140 57.1
Glyma.11G099300 Glycine max HOM05D003530 ORTHO05D004017 3.0e-23 112.8 140 49.3
ClCG10G014140 Citrullus lanatus HOM05D003530 ORTHO05D004017 4.0e-23 112.5 144 47.9
THA.LOC104823944 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 4.0e-23 112.5 191 48.7
Gorai.004G014100 Gossypium raimondii HOM05D003530 ORTHO05D004017 5.2e-23 112.1 181 42.5
Hma1.2p1_0858F.1_g229290 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 5.2e-23 112.1 140 50.0
Lalb_Chr06g0175931 Lupinus albus HOM05D003530 ORTHO05D004017 5.2e-23 112.1 140 47.9
Thecc.04G011600 Theobroma cacao HOM05D003530 ORTHO05D004017 5.2e-23 112.1 140 48.6
Glyma.12G025400 Glycine max HOM05D003530 ORTHO05D004017 6.8e-23 111.7 140 48.6
arahy.Tifrunner.gnm1.ann1.816STY Arachis hypogaea HOM05D003530 ORTHO05D004017 8.9e-23 111.3 147 47.6
Gohir.A05G358400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 8.9e-23 111.3 140 48.6
Phvul.011G027700 Phaseolus vulgaris HOM05D003530 ORTHO05D004017 8.9e-23 111.3 140 48.6
Sed0027802 Sechium edule HOM05D003530 ORTHO05D004017 8.9e-23 111.3 161 44.7
TWI12G0626 Tripterygium wilfordii HOM05D003530 ORTHO05D004017 1.2e-22 110.9 138 49.3
ECA240G2852 Erigeron canadensis HOM05D003530 ORTHO05D004017 1.5e-22 110.5 144 48.6
Gorai.001G263100 Gossypium raimondii HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
SalBow7G4259 Salvia bowleyana HOM05D003530 ORTHO05D004017 2.6e-22 109.8 153 47.1
Solyc02g086730.3 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
Solyc02g086740.1 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
Sopen02g031490 Solanum pennellii HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
Sopen02g031500 Solanum pennellii HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
PGSC0003DMG400000488 Solanum tuberosum HOM05D003530 ORTHO05D004017 2.6e-22 109.8 140 48.6
PGSC0003DMG400000487 Solanum tuberosum HOM05D003530 ORTHO05D004017 3.4e-22 109.4 140 48.6
VMungo1127G1762 Vigna mungo HOM05D003530 ORTHO05D004017 3.4e-22 109.4 140 47.1
Gohir.A07G221400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 4.4e-22 109.0 140 48.6
Gohir.D07G228100 Gossypium hirsutum HOM05D003530 ORTHO05D004017 4.4e-22 109.0 140 47.9
Nn3g16848 Nelumbo nucifera HOM05D003530 ORTHO05D004017 7.5e-22 108.2 140 50.0
Ciclev10016852m.g Citrus clementina HOM05D003530 ORTHO05D004017 9.8e-22 107.8 152 48.0
Gorai.012G062600 Gossypium raimondii HOM05D003530 ORTHO05D004017 9.8e-22 107.8 140 47.1
LjContig00484g0021782 Lotus japonicus HOM05D003530 ORTHO05D004017 1.3e-21 107.5 140 47.1
Nitab4.5_0008510g0020 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.7e-21 107.1 140 47.1
Ah.12g054660 Amaranthus hybridus HOM05D003530 ORTHO05D004017 2.2e-21 106.7 138 47.1
MELO3C009965.2 Cucumis melo HOM05D003530 ORTHO05D004017 2.2e-21 106.7 158 44.9
Migut.H00104 Erythranthe guttata HOM05D003530 ORTHO05D004017 2.9e-21 106.3 140 47.1
Cc07_g02040 Coffea canephora HOM05D003530 ORTHO05D004017 3.7e-21 105.9 140 46.4
CDE10G0273 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 4.9e-21 105.5 140 47.9
Actinidia35752 Actinidia chinensis HOM05D003530 ORTHO05D004017 6.4e-21 105.1 140 46.4
Gohir.D04G055700 Gossypium hirsutum HOM05D003530 ORTHO05D004017 6.4e-21 105.1 140 46.4
Nitab4.5_0009062g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 6.4e-21 105.1 160 46.2
Sc03g0011050 Simmondsia chinensis HOM05D003530 ORTHO05D004017 6.4e-21 105.1 161 43.5
Dinv33477 Davidia involucrata HOM05D003530 ORTHO05D004017 8.3e-21 104.8 138 46.4
Nitab4.5_0004321g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 8.3e-21 104.8 140 45.7
Lju41C36T20 Lonicera japonica HOM05D003530 ORTHO05D004017 1.8e-20 103.6 153 43.8
CDE10G0897 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 2.4e-20 103.2 140 52.9
Nitab4.5_0003505g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.4e-20 103.2 140 45.0
Hma1.2p1_0993F.1_g245370 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 3.2e-20 102.8 140 46.4
Lsat_1_v5_gn_2_91740 Lactuca sativa HOM05D003530 ORTHO05D004017 5.4e-20 102.1 138 46.4
Lsat_1_v5_gn_4_182901 Lactuca sativa HOM05D003530 ORTHO05D004017 5.4e-20 102.1 138 45.7
Oeu054688.1 Olea europaea HOM05D003530 ORTHO05D004017 5.4e-20 102.1 140 46.4
DCAR_021694 Daucus carota HOM05D003530 ORTHO05D004017 9.2e-20 101.3 141 45.4
Psat1g056240 Pisum sativum HOM05D003530 ORTHO05D004017 9.2e-20 101.3 144 47.2
Peaxi162Scf00700g00054 Petunia axillaris HOM05D003530 ORTHO05D004017 2.0e-19 100.1 140 45.7
CSS0007307 Camellia sinensis var. sinensis HOM05D003530 ORTHO05D004017 2.7e-19 99.8 136 45.6
Duzib147G0262 Durio zibethinus HOM05D003530 ORTHO05D004017 2.7e-19 99.8 141 51.8
Migut.K01378 Erythranthe guttata HOM05D003530 ORTHO05D004017 2.7e-19 99.8 140 47.9
Peaxi162Scf00129g10129 Petunia axillaris HOM05D001272 ORTHO05D001843 2.7e-19 99.8 140 45.0
SalBow1G5378 Salvia bowleyana HOM05D003530 ORTHO05D004017 2.7e-19 99.8 140 44.3
DCAR_015053 Daucus carota HOM05D003530 ORTHO05D004017 3.5e-19 99.4 141 44.0
PSO017G1080 Papaver somniferum HOM05D003530 ORTHO05D004017 3.5e-19 99.4 140 49.3
PSO478G3901 Papaver somniferum HOM05D003530 ORTHO05D004017 3.5e-19 99.4 140 49.3
Rhsim10G0020100 Rhododendron simsii HOM05D003530 ORTHO05D004017 4.6e-19 99.0 140 43.6
TAR622G1176 Trochodendron aralioides HOM05D003530 ORTHO05D004017 4.6e-19 99.0 134 44.8
unitig_52.g17666 Utricularia gibba HOM05D003530 ORTHO05D004017 4.6e-19 99.0 144 41.7
Rhsim08G0053400 Rhododendron simsii HOM05D003530 ORTHO05D004017 6.0e-19 98.6 140 47.9
unitig_62.g23149 Utricularia gibba HOM05D003530 ORTHO05D004017 7.8e-19 98.2 140 42.9
SGA_v2.0_scaffold40G15640 Striga asiatica HOM05D003530 ORTHO05D004017 1.0e-18 97.8 139 48.2
Carub.0005s0636 Capsella rubella HOM05D003530 ORTHO05D004017 1.3e-18 97.4 144 50.0
Oeu014862.1 Olea europaea HOM05D003530 ORTHO05D004017 1.3e-18 97.4 136 43.4
PSO063G4512 Papaver somniferum HOM05D003530 ORTHO05D004017 1.7e-18 97.1 140 47.1
SGA_v2.0_scaffold30G12445 Striga asiatica HOM05D003530 ORTHO05D004017 1.7e-18 97.1 140 47.9
MBI10_g28017_MAGBIO Magnolia biondii HOM05D003530 ORTHO05D004017 2.3e-18 96.7 140 47.9
PSO832G4560 Papaver somniferum HOM05D003530 ORTHO05D004017 3.0e-18 96.3 140 46.4
HanXRQChr07g0198851 Helianthus annuus HOM05D003530 ORTHO05D004017 3.9e-18 95.9 134 44.0
QL02p075960 Quercus lobata HOM05D003530 ORTHO05D004017 3.9e-18 95.9 140 46.4
Medtr6g006060 Medicago truncatula HOM05D003530 ORTHO05D004017 5.0e-18 95.5 144 44.4
ATR0789G179 Amborella trichopoda HOM05D003530 ORTHO05D004017 1.5e-17 94.0 132 44.7
Nitab4.5_0005820g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.9e-17 93.6 133 43.6
TPR.G27369 Trifolium pratense HOM05D003530 ORTHO05D004017 5.6e-17 92.0 130 45.4
Lsat_1_v5_gn_2_14440 Lactuca sativa HOM05D003530 ORTHO05D004017 1.6e-16 90.5 148 39.9
Aqoxy3G02924 Aquilegia oxysepala HOM05D003530 ORTHO05D004017 6.2e-16 88.6 133 44.4
SEGI_29600 Sequoiadendron giganteum HOM05D003530 ORTHO05D004017 1.4e-15 87.4 139 46.8
Ah.07g200110 Amaranthus hybridus HOM05D003530 ORTHO05D004017 4.0e-15 85.9 115 47.0
Zm00001eb359610 Zea mays HOM05D003530 ORTHO05D004017 2.6e-14 83.2 139 47.5
Os05g0568300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 4.4e-14 82.4 139 40.3
HPP92_005137 Vanilla planifolia HOM05D003530 ORTHO05D004017 1.3e-13 80.9 139 38.1
Dinv35079 Davidia involucrata HOM05D003530 ORTHO05D004017 2.9e-13 79.7 116 44.8
Pp3c26_10990 Physcomitrium patens HOM05D003530 ORTHO05D004017 6.4e-13 78.6 137 36.5
BcaC01g05648 Brassica carinata HOM05D003530 ORTHO05D004017 8.3e-13 78.2 67 64.2
GSVIVG01032454001 Vitis vinifera HOM05D003530 ORTHO05D004017 1.4e-12 77.4 140 40.0
Pp3c4_24130 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.4e-12 76.6 137 35.8
AUR62037980 Chenopodium quinoa HOM05D003530 ORTHO05D004017 3.2e-12 76.3 142 35.9
Nitab4.5_0006542g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 5.4e-12 75.5 113 44.2
Ca_04182_v3 Cicer arietinum L. HOM05D003530 ORTHO05D004017 3.5e-11 72.8 82 53.7
CAN.G206.18 Capsicum annuum HOM05D003530 ORTHO05D004017 6.0e-11 72.0 80 52.5
SMO356G0309 Selaginella moellendorffii HOM05D003530 ORTHO05D004017 3.9e-10 69.3 124 37.1
Pp3c16_2080 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.1e-09 67.8 136 31.6
Nitab4.5_0010319g0050 Nicotiana tabacum HOM05D003530 ORTHO05D004017 2.5e-09 66.6 129 38.0
Cre13.g581650 Chlamydomonas reinhardtii HOM05D003530 ORTHO05D004017 4.3e-09 65.9 137 30.7
Pp3c5_2700 Physcomitrium patens HOM05D003530 ORTHO05D004017 4.3e-09 65.9 136 34.6
Lalb_Chr10g0093931 Lupinus albus HOM05D003530 ORTHO05D004017 7.3e-09 65.1 164 32.9
Pp3c25_1440 Physcomitrium patens HOM05D003530 ORTHO05D004017 7.3e-09 65.1 129 31.0
Mapoly0071s0038 Marchantia polymorpha HOM05D003530 ORTHO05D004017 2.1e-08 63.5 129 38.8
AUR62019712 Chenopodium quinoa HOM05D003530 ORTHO05D004017 1.1e-07 61.2 70 50.0
TAR374G1092 Trochodendron aralioides HOM05D003530 ORTHO05D004017 4.4e-06 55.8 77 45.5


User provided reference genes

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