Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 3.6e-39 164.5 85 100.0
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.4e-30 135.2 69 100.0
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.8e-15 85.1 55 76.4
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.7e-15 84.7 55 74.5
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.4e-14 82.8 55 70.9
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.4e-14 82.8 55 70.9
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.8e-14 82.4 55 70.9
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.8e-14 82.4 55 70.9
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.8e-14 82.4 55 70.9
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.4e-14 82.0 55 70.9
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.4e-14 82.0 55 70.9
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.1e-14 81.6 55 70.9
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 5.3e-14 80.9 55 70.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 6.9e-14 80.5 63 60.3
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.2e-13 79.7 55 70.9
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.2e-13 79.7 55 72.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.5e-13 79.3 55 69.1
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.5e-13 79.3 55 69.1
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.0e-13 79.0 55 65.5
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 2.0e-13 79.0 55 69.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-13 79.0 55 69.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.0e-13 79.0 55 69.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 2.6e-13 78.6 55 69.1
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 3.4e-13 78.2 63 58.7
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 4.5e-13 77.8 65 56.9
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 4.5e-13 77.8 55 69.1
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 4.5e-13 77.8 55 70.9
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.5e-13 77.8 55 69.1
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.9e-13 77.4 54 66.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 5.9e-13 77.4 54 64.8
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 5.9e-13 77.4 54 64.8
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 5.9e-13 77.4 54 64.8
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 5.9e-13 77.4 54 64.8
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.9e-13 77.4 55 65.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 5.9e-13 77.4 55 69.1
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 5.9e-13 77.4 55 69.1
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 67.3
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 67.3
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 65.5
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 67.3
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 67.3
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 7.7e-13 77.0 55 69.1
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-12 76.6 55 69.1
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-12 76.6 55 69.1
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.0e-12 76.6 55 69.1
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.0e-12 76.6 55 69.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.0e-12 76.6 55 67.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.7e-12 75.9 54 66.7
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.7e-12 75.9 55 65.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.7e-12 75.9 55 63.6
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.7e-12 75.9 55 65.5
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.7e-12 75.9 55 63.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.7e-12 75.9 55 65.5
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 63.6
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 63.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 65.5
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 65.5
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 65.5
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 65.5
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 65.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.2e-12 75.5 55 61.8
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.9e-12 75.1 55 61.8
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.9e-12 75.1 55 63.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.9e-12 75.1 55 63.6
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 2.9e-12 75.1 55 61.8
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 3.8e-12 74.7 54 61.1
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 3.8e-12 74.7 54 61.1
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.8e-12 74.7 55 65.5
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 5.0e-12 74.3 55 63.6
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 5.0e-12 74.3 55 61.8
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 6.5e-12 73.9 55 61.8
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 6.5e-12 73.9 55 63.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 6.5e-12 73.9 55 65.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 6.5e-12 73.9 55 63.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 8.5e-12 73.6 55 63.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-11 73.2 55 60.0
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.1e-11 73.2 55 60.0
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.4e-11 72.8 54 64.8
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.4e-11 72.8 55 63.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-11 72.8 55 60.0
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-11 72.8 55 61.8
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-11 72.8 55 61.8
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.9e-11 72.4 58 62.1
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 60.0
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 60.0
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 58.2
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 61.8
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 60.0
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 61.8
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 63.6
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.5e-11 72.0 55 63.6
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.2e-11 71.6 55 61.8
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 3.2e-11 71.6 55 58.2
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 4.2e-11 71.2 54 63.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.2e-11 71.2 55 60.0
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.2e-11 71.2 55 60.0
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 5.5e-11 70.9 55 60.0
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 5.5e-11 70.9 55 61.8
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 5.5e-11 70.9 55 61.8
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 5.5e-11 70.9 55 58.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 5.5e-11 70.9 55 58.2
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.5e-11 70.9 58 62.1
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 7.2e-11 70.5 55 60.0
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 7.2e-11 70.5 55 61.8
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 9.4e-11 70.1 55 60.0
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 9.4e-11 70.1 55 60.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 9.4e-11 70.1 55 56.4
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.2e-10 69.7 55 58.2
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.2e-10 69.7 55 56.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.2e-10 69.7 55 60.0
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.6e-10 69.3 55 61.8
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.6e-10 69.3 65 53.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.6e-10 69.3 71 52.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.7e-10 68.6 55 58.2
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.7e-10 68.6 55 58.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.6e-10 68.2 57 50.9
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.6e-10 68.2 55 56.4
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 4.6e-10 67.8 57 57.9
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.1e-10 67.4 55 56.4
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 7.9e-10 67.0 55 54.5
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.0e-09 66.6 65 52.3
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.0e-09 66.6 65 52.3
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.0e-09 66.6 65 52.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.4e-09 66.2 55 52.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.4e-09 66.2 67 46.3
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 2.3e-09 65.5 55 54.5
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 2.3e-09 65.5 55 52.7
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.0e-09 65.1 46 58.7
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 3.0e-09 65.1 41 78.0
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 3.9e-09 64.7 55 52.7
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 5.1e-09 64.3 54 53.7
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.8e-09 63.5 55 52.7
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.1e-08 63.2 65 47.7
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.5e-08 62.8 59 54.2
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.5e-08 62.0 55 54.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 3.3e-08 61.6 55 49.1
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.3e-08 61.2 55 49.1
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.3e-07 59.7 52 55.8
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.8e-06 55.8 43 60.5
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.4e-06 55.5 56 48.2


User provided reference genes

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