Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p28360 Brassica napus HOM05D003480 ORTHO05D004425 5.0e-48 194.1 98 100.0
BraA02t07873Z Brassica rapa HOM05D003480 ORTHO05D004425 5.0e-48 194.1 98 100.0
Sp2g09160 Schrenkiella parvula HOM05D003480 ORTHO05D004425 2.8e-35 151.8 130 66.9
BcaC06g31627 Brassica carinata HOM05D003480 ORTHO05D004425 1.8e-34 149.1 130 65.4
BraA06t27601Z Brassica rapa HOM05D003480 ORTHO05D004425 1.5e-33 146.0 125 65.6
Thhalv10003390m.g Eutrema salsugineum HOM05D003480 ORTHO05D004425 2.0e-33 145.6 130 64.6
A09p21050 Brassica napus HOM05D003480 ORTHO05D004425 2.9e-32 141.7 124 65.3
C09p26790 Brassica napus HOM05D003480 ORTHO05D004425 2.9e-32 141.7 124 65.3
BolC9t55567H Brassica oleracea HOM05D003480 ORTHO05D004425 2.9e-32 141.7 124 65.3
BcaB07g30957 Brassica carinata HOM05D003480 ORTHO05D004425 1.1e-31 139.8 124 64.5
BcaC04g21840 Brassica carinata HOM05D003480 ORTHO05D004425 1.1e-31 139.8 124 64.5
BcaC06g31628 Brassica carinata HOM05D003480 ORTHO05D004425 1.1e-31 139.8 131 61.8
BcaC06g34569 Brassica carinata HOM05D003480 ORTHO05D004425 1.1e-31 139.8 131 61.8
C07p27040 Brassica napus HOM05D003480 ORTHO05D004425 1.1e-31 139.8 131 62.6
BolC7t43234H Brassica oleracea HOM05D003480 ORTHO05D004425 1.1e-31 139.8 131 61.8
BraA09t37704Z Brassica rapa HOM05D003480 ORTHO05D004425 1.1e-31 139.8 124 64.5
Carub.0008s0415 Capsella rubella HOM05D003480 ORTHO05D004425 3.2e-31 138.3 104 73.1
AL8G15580 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 4.2e-31 137.9 129 62.0
AT5G44320 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 5.5e-31 137.5 129 62.0
BcaB07g30952 Brassica carinata HOM05D003480 ORTHO05D004425 2.1e-30 135.6 124 62.9
CARHR178810 Cardamine hirsuta HOM05D003480 ORTHO05D004425 7.9e-30 133.7 126 61.1
A06p47300 Brassica napus HOM05D003480 ORTHO05D004425 5.1e-29 131.0 126 61.1
Glyma.13G238200 Glycine max HOM05D003480 ORTHO05D004425 1.1e-28 129.8 125 60.0
Glyma.15G075100 Glycine max HOM05D003480 ORTHO05D004425 1.5e-28 129.4 125 60.0
Aa31LG6G3040 Aethionema arabicum HOM05D003480 ORTHO05D004425 2.0e-28 129.0 126 60.3
Sp7g19050 Schrenkiella parvula HOM05D003480 ORTHO05D004425 2.0e-28 129.0 128 57.8
AUR62015260 Chenopodium quinoa HOM05D003480 ORTHO05D004425 2.6e-28 128.6 109 63.3
Duzib192G0865 Durio zibethinus HOM05D003480 ORTHO05D004425 2.6e-28 128.6 125 60.8
C02p44940 Brassica napus HOM05D003480 ORTHO05D004425 4.4e-28 127.9 92 75.0
Phvul.006G184500 Phaseolus vulgaris HOM05D003480 ORTHO05D004425 4.4e-28 127.9 124 58.9
Carub.0007s2046 Capsella rubella HOM05D003480 ORTHO05D004425 5.7e-28 127.5 128 61.7
THA.LOC104812284 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 5.7e-28 127.5 124 58.1
AUR62018061 Chenopodium quinoa HOM05D003480 ORTHO05D004425 9.7e-28 126.7 109 62.4
AUR62019528 Chenopodium quinoa HOM05D003480 ORTHO05D004425 9.7e-28 126.7 109 62.4
AUR62036107 Chenopodium quinoa HOM05D003480 ORTHO05D004425 9.7e-28 126.7 109 62.4
COL.COLO4_31457 Corchorus olitorius HOM05D003480 ORTHO05D004425 9.7e-28 126.7 125 59.2
Dinv40570 Davidia involucrata HOM05D003480 ORTHO05D004425 9.7e-28 126.7 127 59.1
Gohir.A10G026600 Gossypium hirsutum HOM05D003480 ORTHO05D004425 9.7e-28 126.7 123 58.5
Nn1g06510 Nelumbo nucifera HOM05D003480 ORTHO05D004425 9.7e-28 126.7 120 60.0
Gohir.D10G027200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.3e-27 126.3 123 59.3
Gorai.011G028500 Gossypium raimondii HOM05D003480 ORTHO05D004425 1.3e-27 126.3 123 59.3
CARHR227530 Cardamine hirsuta HOM05D003480 ORTHO05D004425 1.7e-27 125.9 127 57.5
Potri.004G044500 Populus trichocarpa HOM05D003480 ORTHO05D004425 1.7e-27 125.9 126 58.7
Thecc.06G186000 Theobroma cacao HOM05D003480 ORTHO05D004425 2.2e-27 125.6 123 59.3
Sabra11G0037300 Salix brachista HOM05D003480 ORTHO05D004425 2.8e-27 125.2 125 59.2
THA.LOC104812939 Tarenaya hassleriana HOM05D003480 ORTHO05D004425 2.8e-27 125.2 127 58.3
Aqoxy4G02656 Aquilegia oxysepala HOM05D003480 ORTHO05D004425 3.7e-27 124.8 120 57.5
Psat3g013320 Pisum sativum HOM05D003480 ORTHO05D004425 3.7e-27 124.8 130 58.5
Sabra04G0027700 Salix brachista HOM05D003480 ORTHO05D004425 3.7e-27 124.8 126 58.7
Actinidia05643 Actinidia chinensis HOM05D003480 ORTHO05D004425 4.8e-27 124.4 125 58.4
TAR626G0815 Trochodendron aralioides HOM05D003480 ORTHO05D004425 4.8e-27 124.4 115 59.1
VMungo0540G0515 Vigna mungo HOM05D003480 ORTHO05D004425 4.8e-27 124.4 124 57.3
Haze_06432 Corylus avellana HOM05D003480 ORTHO05D004425 8.2e-27 123.6 125 56.0
Dinv17321 Davidia involucrata HOM05D003480 ORTHO05D004425 8.2e-27 123.6 120 59.2
Lj6g0027126 Lotus japonicus HOM05D003480 ORTHO05D004425 8.2e-27 123.6 126 58.7
MBI10_g03527_MAGBIO Magnolia biondii HOM05D003480 ORTHO05D004425 8.2e-27 123.6 118 59.3
Manes.11G028400 Manihot esculenta HOM05D003480 ORTHO05D004425 8.2e-27 123.6 125 59.2
Sc17g0006150 Simmondsia chinensis HOM05D003480 ORTHO05D004425 8.2e-27 123.6 109 60.6
AT4G20980 Arabidopsis thaliana HOM05D003480 ORTHO05D004425 1.1e-26 123.2 127 57.5
Cpa.g.sc27.36 Carica papaya HOM05D003480 ORTHO05D004425 1.1e-26 123.2 126 57.9
Potri.011G053500 Populus trichocarpa HOM05D003480 ORTHO05D004425 1.1e-26 123.2 126 57.9
Sed0021745 Sechium edule HOM05D003480 ORTHO05D004425 1.1e-26 123.2 120 59.2
ATR0665G336 Amborella trichopoda HOM05D003480 ORTHO05D004425 1.4e-26 122.9 116 59.5
BcaC03g16652 Brassica carinata HOM05D003480 ORTHO05D004425 1.4e-26 122.9 103 68.0
CAN.G413.27 Capsicum annuum HOM05D003480 ORTHO05D004425 1.4e-26 122.9 125 56.8
DCAR_024898 Daucus carota HOM05D003480 ORTHO05D004425 1.4e-26 122.9 116 60.3
GSVIVG01002790001 Vitis vinifera HOM05D003480 ORTHO05D004425 1.4e-26 122.9 108 60.2
CSS0021711 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 1.8e-26 122.5 111 60.4
CSS0026003 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D004425 1.8e-26 122.5 126 57.9
Duzib235G0380 Durio zibethinus HOM05D003480 ORTHO05D004425 1.8e-26 122.5 128 58.6
Gohir.A05G161200 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.8e-26 122.5 124 56.5
Gohir.D05G163900 Gossypium hirsutum HOM05D003480 ORTHO05D004425 1.8e-26 122.5 124 56.5
Gorai.009G169000 Gossypium raimondii HOM05D003480 ORTHO05D004425 1.8e-26 122.5 124 56.5
EL10Ac8g19153 Beta vulgaris HOM05D003480 ORTHO05D004425 2.4e-26 122.1 109 60.6
HanXRQChr01g0003861 Helianthus annuus HOM05D003480 ORTHO05D004425 3.1e-26 121.7 117 59.0
PSO541G6261 Papaver somniferum HOM05D003480 ORTHO05D004425 3.1e-26 121.7 105 61.9
PSO675G1395 Papaver somniferum HOM05D003480 ORTHO05D004425 3.1e-26 121.7 105 61.9
Rhsim13G0138500 Rhododendron simsii HOM05D003480 ORTHO05D004425 3.1e-26 121.7 106 61.3
Solyc02g078120.2 Solanum lycopersicum HOM05D003480 ORTHO05D004425 3.1e-26 121.7 120 55.8
Actinidia16555 Actinidia chinensis HOM05D003480 ORTHO05D004425 4.1e-26 121.3 126 57.1
CiPaw.10G049800 Carya illinoinensis HOM05D003480 ORTHO05D004425 4.1e-26 121.3 127 55.9
Sopen02g022950 Solanum pennellii HOM05D003480 ORTHO05D004425 4.1e-26 121.3 120 55.8
Gohir.A06G128300 Gossypium hirsutum HOM05D003480 ORTHO05D004425 5.3e-26 120.9 125 57.6
Gorai.010G154200 Gossypium raimondii HOM05D003480 ORTHO05D004425 5.3e-26 120.9 125 57.6
Lj1A1204T32 Lonicera japonica HOM05D003480 ORTHO05D004425 5.3e-26 120.9 126 57.1
PGR042G2561 Punica granatum HOM05D003480 ORTHO05D004425 5.3e-26 120.9 125 56.8
vmacro03877 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 5.3e-26 120.9 106 61.3
Ciclev10017475m.g Citrus clementina HOM05D003480 ORTHO05D004425 7.0e-26 120.6 113 59.3
Medtr7g111950 Medicago truncatula HOM05D003480 ORTHO05D004425 7.0e-26 120.6 133 56.4
Psat1g204440 Pisum sativum HOM05D003480 ORTHO05D004425 7.0e-26 120.6 126 56.3
TWI38G1181 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 7.0e-26 120.6 126 56.3
QL06p052924 Quercus lobata HOM05D003480 ORTHO05D004425 9.1e-26 120.2 125 56.0
RcHm_v2.0_Chr5g0048541 Rosa chinensis HOM05D003480 ORTHO05D004425 9.1e-26 120.2 126 58.7
TWI38G1399 Tripterygium wilfordii HOM05D003480 ORTHO05D004425 9.1e-26 120.2 126 57.1
TAR375G0365 Trochodendron aralioides HOM05D003480 ORTHO05D004425 9.1e-26 120.2 126 54.8
CiPaw.09G060800 Carya illinoinensis HOM05D003480 ORTHO05D004425 1.2e-25 119.8 125 56.8
TPR.G16497 Trifolium pratense HOM05D003480 ORTHO05D004425 1.2e-25 119.8 128 53.9
AL7G33170 Arabidopsis lyrata HOM05D003480 ORTHO05D004425 1.5e-25 119.4 122 57.4
Lsat_1_v5_gn_1_126340 Lactuca sativa HOM05D003480 ORTHO05D004425 1.5e-25 119.4 108 61.1
QL06p053406 Quercus lobata HOM05D003480 ORTHO05D004425 1.5e-25 119.4 124 55.6
Ca_00342_v3 Cicer arietinum L. HOM05D003480 ORTHO05D004425 2.0e-25 119.0 116 60.3
Eucgr.D00614 Eucalyptus grandis HOM05D003480 ORTHO05D004425 2.0e-25 119.0 126 57.1
PSO210G2017 Papaver somniferum HOM05D003480 ORTHO05D004425 2.0e-25 119.0 102 62.7
Peaxi162Scf00048g00153 Petunia axillaris HOM05D003480 ORTHO05D004425 2.0e-25 119.0 125 56.0
HanXRQChr16g0516221 Helianthus annuus HOM05D003480 ORTHO05D004425 2.6e-25 118.6 110 59.1
MD05G1338100 Malus domestica HOM05D003480 ORTHO05D004425 2.6e-25 118.6 119 55.5
Nitab4.5_0009438g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 2.6e-25 118.6 120 56.7
Nitab4.5_0011879g0010 Nicotiana tabacum HOM05D003480 ORTHO05D004425 2.6e-25 118.6 101 62.4
PGSC0003DMG400029694 Solanum tuberosum HOM05D003480 ORTHO05D004425 2.6e-25 118.6 120 56.7
Ah.12g058540 Amaranthus hybridus HOM05D003480 ORTHO05D004425 3.5e-25 118.2 109 57.8
Nn1g04114 Nelumbo nucifera HOM05D003480 ORTHO05D004425 3.5e-25 118.2 119 57.1
Prupe.4G048700 Prunus persica HOM05D003480 ORTHO05D004425 3.5e-25 118.2 122 58.2
Atru.chr10.1865 Acer truncatum HOM05D003480 ORTHO05D004425 4.5e-25 117.9 101 62.4
ECA248G3601 Erigeron canadensis HOM05D003480 ORTHO05D004425 4.5e-25 117.9 101 62.4
Lalb_Chr20g0121821 Lupinus albus HOM05D003480 ORTHO05D004425 4.5e-25 117.9 126 54.8
PSO210G2817 Papaver somniferum HOM05D003480 ORTHO05D004425 4.5e-25 117.9 102 61.8
CANSAT35G1561 Cannabis sativa HOM05D003480 ORTHO05D004425 5.9e-25 117.5 126 56.3
Sed0013036 Sechium edule HOM05D003480 ORTHO05D004425 5.9e-25 117.5 120 58.3
FAN04G1437 Fragaria x ananassa HOM05D003480 ORTHO05D004425 7.7e-25 117.1 101 61.4
TAR627G1095 Trochodendron aralioides HOM05D003480 ORTHO05D004425 7.7e-25 117.1 120 54.2
arahy.Tifrunner.gnm1.ann1.FXY2MK Arachis hypogaea HOM05D003480 ORTHO05D004425 1.0e-24 116.7 125 56.0
arahy.Tifrunner.gnm1.ann1.R134T8 Arachis hypogaea HOM05D003480 ORTHO05D004425 1.0e-24 116.7 125 56.0
FvH4_5g27490 Fragaria vesca HOM05D003480 ORTHO05D004425 1.0e-24 116.7 126 57.1
FAN13G0993 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.0e-24 116.7 126 57.1
FAN18G0389 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.0e-24 116.7 126 57.1
Hma1.2p1_0673F.1_g201280 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 1.0e-24 116.7 119 56.3
Hma1.2p1_1222F.1_g268180 Hydrangea macrophylla HOM05D003480 ORTHO05D004425 1.0e-24 116.7 119 56.3
Hund23769 Selenicereus undatus HOM05D003480 ORTHO05D004425 1.0e-24 116.7 116 56.0
SGA_v2.0_scaffold49G18296 Striga asiatica HOM05D003480 ORTHO05D004425 1.0e-24 116.7 127 54.3
CAN.G529.1 Capsicum annuum HOM05D003480 ORTHO05D004425 1.3e-24 116.3 124 54.8
Lalb_Chr15g0089781 Lupinus albus HOM05D003480 ORTHO05D004425 1.3e-24 116.3 125 55.2
unitig_22.g5701 Utricularia gibba HOM05D003480 ORTHO05D004425 1.7e-24 115.9 116 56.0
MSTRG.15878 Avicennia marina HOM05D003480 ORTHO05D004425 2.9e-24 115.2 124 53.2
FAN08G1211 Fragaria x ananassa HOM05D003480 ORTHO05D004425 2.9e-24 115.2 126 56.3
Migut.H01483 Erythranthe guttata HOM05D003480 ORTHO05D004425 3.8e-24 114.8 125 53.6
Migut.M01135 Erythranthe guttata HOM05D003480 ORTHO05D004425 5.0e-24 114.4 119 54.6
CDE06G2702 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 8.5e-24 113.6 118 54.2
Os05g0566500 Oryza sativa ssp. japonica HOM05D003480 ORTHO05D004425 1.1e-23 113.2 113 54.0
unitig_8.g3643 Utricularia gibba HOM05D003480 ORTHO05D004425 1.5e-23 112.8 113 54.9
ATR0665G315 Amborella trichopoda HOM05D003480 ORTHO05D004425 2.5e-23 112.1 98 60.2
CDE07G0331 Ceratophyllum demersum HOM05D003480 ORTHO05D004425 2.5e-23 112.1 118 53.4
FvH4_3g37950 Fragaria vesca HOM05D003480 ORTHO05D004425 1.2e-22 109.8 101 60.4
FAN11G2816 Fragaria x ananassa HOM05D003480 ORTHO05D004425 1.2e-22 109.8 101 60.4
SHI13762 Sapria himalayana HOM05D003480 ORTHO05D004425 1.2e-22 109.8 108 55.6
FAN16G2584 Fragaria x ananassa HOM05D003480 ORTHO05D004425 2.1e-22 109.0 126 55.6
FAN21G3883 Fragaria x ananassa HOM05D003480 ORTHO05D004425 2.1e-22 109.0 126 55.6
Zm00001eb157540 Zea mays HOM05D003480 ORTHO05D004425 1.4e-21 106.3 115 53.0
ClCG01G025340 Citrullus lanatus HOM05D003480 ORTHO05D004425 1.8e-21 105.9 92 62.0
CsaV3_6G052600 Cucumis sativus L. HOM05D003480 ORTHO05D004425 1.8e-21 105.9 92 62.0
SEGI_12249 Sequoiadendron giganteum HOM05D003480 ORTHO05D004425 1.8e-21 105.9 95 58.9
Manes.04G137900 Manihot esculenta HOM05D003480 ORTHO05D004425 2.3e-21 105.5 125 52.8
Pp3c13_8400 Physcomitrium patens HOM05D003480 ORTHO05D004425 5.2e-21 104.4 118 50.8
Pp3c3_3440 Physcomitrium patens HOM05D003480 ORTHO05D004425 5.2e-21 104.4 118 50.8
SGA_v2.0_scaffold159G37637 Striga asiatica HOM05D003480 ORTHO05D004425 5.2e-21 104.4 118 50.0
Zm00001eb296070 Zea mays HOM05D003480 ORTHO05D004425 1.5e-20 102.8 98 54.1
SMO169G0124 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 5.7e-20 100.9 112 49.1
SMO298G0032 Selaginella moellendorffii HOM05D003480 ORTHO05D004425 2.2e-19 99.0 112 48.2
TPR.G1669 Trifolium pratense HOM05D003480 ORTHO05D004425 2.8e-19 98.6 104 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1925 Anthoceros agrestis HOM05D003480 ORTHO05D004425 8.2e-19 97.1 117 45.3
Mapoly0112s0008 Marchantia polymorpha HOM05D003480 ORTHO05D004425 4.1e-18 94.7 120 44.2
Pp3c12_8550 Physcomitrium patens HOM05D003480 ORTHO05D004425 5.3e-18 94.4 95 49.5
CBR_g20021 Chara braunii HOM05D003480 ORTHO05D004425 7.0e-18 94.0 96 50.0
CBR_g8049 Chara braunii HOM05D003480 ORTHO05D004425 1.0e-16 90.1 115 46.1
Oeu029359.1 Olea europaea HOM05D001843 ORTHO05D008358 6.1e-14 80.9 81 54.3
vmacro03873 Vaccinium macrocarpon HOM05D003480 ORTHO05D004425 3.4e-12 75.1 76 53.9
MCO16G041 Micromonas commoda HOM05D003480 ORTHO05D004425 3.8e-08 61.6 94 34.0
PRCOL_00004325 Prasinoderma coloniale HOM05D003480 ORTHO05D004425 3.2e-07 58.5 85 36.5
Cfa024070 Carpinus fangiana HOM05D003480 ORTHO05D004425 2.1e-06 55.8 86 37.2
Cre05.g242300 Chlamydomonas reinhardtii HOM05D003480 ORTHO05D004425 3.6e-06 55.1 116 34.5
SEGI_13937 Sequoiadendron giganteum HOM05D003480 ORTHO05D004425 8.0e-06 53.9 48 56.2


User provided reference genes

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