Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1399.8 734 100.0
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 0.0e+00 1283.1 755 91.0
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1282.7 738 92.1
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1266.9 723 92.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 2.2e-265 919.1 581 85.0
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.6e-250 869.0 775 62.1
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 3.6e-244 848.6 771 62.1
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.0e-242 842.8 775 61.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 5.8e-242 841.3 775 61.3
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 4.9e-241 838.2 775 61.2
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.4e-240 834.7 772 61.7
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 6.0e-239 831.2 702 67.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 6.0e-239 831.2 774 60.9
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.6e-236 823.2 795 59.2
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.4e-234 815.5 769 60.5
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.3e-230 803.5 765 59.6
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 3.3e-221 772.3 775 58.3
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.8e-219 766.5 772 56.9
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.1e-181 641.0 769 50.7
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.0e-173 613.6 584 57.7
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 2.3e-150 537.0 808 42.0
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.7e-145 520.8 813 41.5
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-144 517.7 805 41.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.4e-142 511.1 787 41.7
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.4e-140 502.3 809 40.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 8.3e-140 501.9 799 41.6
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-138 497.7 796 41.3
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.0e-138 497.3 810 40.2
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.3e-137 494.6 803 39.9
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.3e-136 489.6 789 41.1
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.4e-134 484.6 793 40.6
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.0e-134 483.0 785 40.4
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 6.8e-134 482.3 809 39.2
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.2e-133 481.5 806 39.3
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.6e-133 480.3 806 40.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 3.4e-133 479.9 811 39.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 5.8e-133 479.2 813 39.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.7e-132 477.6 785 40.1
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.9e-132 476.9 785 40.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.1e-131 474.9 816 39.5
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.1e-131 473.0 793 38.6
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 9.2e-131 471.9 807 39.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.7e-130 470.3 798 38.8
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 6.0e-130 469.2 798 38.6
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.9e-129 466.5 818 39.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.1e-128 464.9 838 37.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-128 463.8 803 37.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-128 463.8 803 37.2
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.8e-126 455.7 806 37.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 7.6e-125 452.2 808 37.9
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.9e-124 450.3 797 37.6
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 3.7e-124 449.9 788 37.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 6.4e-124 449.1 808 37.4
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.4e-124 448.7 826 36.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.4e-123 448.0 786 38.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 7.1e-123 445.7 796 38.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.5e-122 443.4 820 37.8
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.5e-122 443.4 809 37.8
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-121 441.8 817 37.6
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 5.1e-121 439.5 808 37.6
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-120 438.3 806 37.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.5e-120 438.0 810 37.4
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 4.7e-119 433.0 793 37.8
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 6.2e-119 432.6 811 36.5
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 7.6e-117 425.6 806 36.8
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.3e-116 424.9 806 37.1
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.7e-116 424.5 763 37.5
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.9e-116 423.7 815 35.3
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.9e-116 423.7 837 36.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 9.3e-115 418.7 785 36.7
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.6e-114 417.9 764 37.8
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.0e-113 415.2 791 37.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.0e-113 413.7 772 37.6
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 5.1e-113 412.9 839 35.0
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.1e-112 411.8 698 39.4
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.8e-110 404.4 767 36.9
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.2e-109 401.7 787 37.4
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 2.6e-109 400.6 829 35.8
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.6e-109 400.6 792 36.5
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 3.4e-109 400.2 606 41.3
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 9.9e-109 398.7 775 36.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.3e-108 398.3 777 36.7
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 4.6e-106 389.8 721 37.9
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 7.9e-106 389.0 819 33.8
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.3e-105 387.5 842 33.4
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 6.6e-105 386.0 800 34.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.3e-104 383.6 789 35.4
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.3e-104 383.6 783 36.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.4e-104 382.5 789 35.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 1.6e-103 381.3 749 35.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.8e-103 380.6 788 34.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.8e-103 379.8 577 40.9
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.9e-100 370.5 745 35.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 8.4e-100 369.0 793 34.8
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 8.4e-100 369.0 850 34.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.3e-97 361.7 749 35.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.3e-97 360.9 762 34.4
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.0e-97 360.5 622 37.9
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.0e-97 360.5 756 35.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.3e-96 357.1 568 39.4
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 3.7e-95 353.6 605 37.9
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-94 351.3 733 33.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.9e-94 349.4 829 34.0
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.9e-92 344.0 617 38.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.9e-92 344.0 790 33.4
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 3.8e-92 343.6 579 39.4
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.2e-91 340.5 862 32.9
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 4.2e-91 340.1 849 31.6
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.7e-90 337.4 788 32.2
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.6e-90 336.7 847 31.1
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-89 335.5 733 33.7
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.0e-89 335.5 771 31.9
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.7e-87 327.0 760 34.1
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.1e-86 323.9 884 29.0
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.5e-85 321.6 806 31.5
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.4e-85 320.5 751 33.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 7.2e-83 312.8 775 32.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.2e-82 312.0 611 34.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.6e-82 310.1 773 31.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 3.0e-81 307.4 771 32.0
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 7.7e-77 292.7 550 36.0
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 3.0e-73 280.8 465 38.9
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.8e-71 274.2 380 44.5
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 4.1e-70 270.4 832 28.6
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 4.4e-64 250.4 360 42.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.7e-61 239.6 843 27.4
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.9e-60 237.7 841 27.8
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-59 235.0 348 41.4
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 5.5e-59 233.4 762 29.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.9e-53 213.4 441 34.9
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.5e-48 196.4 273 44.0
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.9e-43 181.8 884 24.1
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-43 180.3 877 23.8
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 8.8e-41 172.9 343 35.0
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.8e-39 167.9 288 36.1
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.0e-36 159.5 253 38.3
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 2.3e-36 158.3 424 31.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.3e-35 154.1 353 33.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.3e-35 154.1 175 55.4
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 2.8e-34 151.4 382 32.7
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.8e-34 151.4 262 36.6
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-30 138.7 184 44.0
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.8e-24 116.3 252 34.1
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.7e-21 108.2 242 33.5
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 8.6e-20 103.2 130 50.8
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-19 102.1 162 38.9
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-18 98.2 163 42.9
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-18 98.2 163 42.9
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.8e-17 93.6 189 35.4
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 3.4e-16 91.3 108 46.3
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 5.8e-16 90.5 99 48.5
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 8.3e-15 86.7 122 44.3
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.9e-14 85.5 117 41.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.9e-14 85.5 164 35.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 5.1e-12 77.4 120 37.5
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 6.6e-12 77.0 74 50.0
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-11 75.9 123 37.4
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.5e-11 75.9 156 32.7
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.6e-11 73.9 117 40.2
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.6e-11 73.9 137 35.0
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-10 72.8 79 50.6
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-09 69.3 208 27.9
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.8e-09 68.9 80 46.2
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.1e-09 68.2 162 32.1
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.8e-09 67.0 147 32.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 8.9e-09 66.6 69 46.4
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.0e-08 65.5 243 25.1
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.6e-08 65.1 68 45.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 4.9e-07 60.8 92 32.6
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 8.4e-07 60.1 49 49.0


User provided reference genes

Program Settings