Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 0.0e+00 1148.3 594 100.0
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 0.0e+00 1143.3 594 99.7
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 0.0e+00 1115.1 594 97.3
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 0.0e+00 1111.3 594 97.0
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 0.0e+00 1111.3 594 97.0
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 0.0e+00 1087.8 594 95.3
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.2e-301 1039.3 594 90.6
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.4e-286 989.2 577 88.9
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 6.9e-286 986.9 591 87.5
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.4e-285 984.6 590 86.9
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 5.8e-285 983.8 590 86.8
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 3.1e-278 961.4 590 84.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.7e-274 948.3 576 84.7
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 9.7e-264 913.3 578 82.7
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 4.4e-256 887.9 518 88.2
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 4.1e-246 854.7 578 77.7
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 3.9e-204 715.3 555 67.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 1.2e-202 710.3 591 63.1
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.8e-200 701.4 596 63.1
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.2e-198 694.1 589 61.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.1e-195 687.2 597 62.1
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.5e-195 686.8 590 61.4
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.1e-193 679.1 594 61.1
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 4.0e-193 678.7 593 60.5
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 4.9e-191 671.8 586 60.4
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 4.2e-190 668.7 589 60.1
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 7.8e-189 664.5 592 60.1
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-188 663.3 601 59.9
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.5e-187 660.2 586 58.5
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 4.3e-187 658.7 599 59.8
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 5.6e-187 658.3 583 59.9
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 5.6e-187 658.3 593 59.5
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 9.6e-187 657.5 583 60.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 9.6e-187 657.5 599 59.1
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 3.6e-186 655.6 598 59.5
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 8.1e-186 654.4 587 59.5
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 3.4e-184 649.0 589 58.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.5e-184 648.7 620 57.7
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 3.8e-183 645.6 585 58.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.4e-182 642.9 590 58.5
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 7.1e-182 641.3 584 59.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.8e-180 636.7 607 58.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.9e-179 633.3 594 58.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 7.4e-179 631.3 594 58.2
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.3e-178 630.6 574 59.6
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 3.1e-177 625.9 595 58.5
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.0e-177 625.5 724 50.8
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 5.3e-177 625.2 542 61.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-176 624.0 605 57.9
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.2e-176 624.0 592 57.4
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 9.9e-176 620.9 592 58.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.7e-175 620.2 563 63.1
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.9e-175 619.4 592 56.9
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 2.4e-174 616.3 592 56.8
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 9.3e-174 614.4 593 56.2
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 9.3e-174 614.4 592 56.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.6e-173 613.6 595 57.6
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 2.1e-173 613.2 592 56.6
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 6.0e-173 611.7 591 56.0
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 7.9e-173 611.3 624 55.4
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 3.9e-172 609.0 584 56.2
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.1e-171 607.4 638 53.9
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 2.5e-171 606.3 597 56.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 7.4e-171 604.7 585 55.9
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.6e-170 603.6 588 57.7
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.8e-170 602.8 583 56.1
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 8.1e-170 601.3 587 55.4
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.8e-169 600.1 591 54.0
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 5.3e-169 598.6 544 58.8
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 6.9e-169 598.2 579 55.6
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.5e-168 597.0 614 53.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.5e-168 597.0 585 55.6
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 7.6e-168 594.7 532 60.0
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 7.6e-168 594.7 589 55.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.3e-167 594.0 585 55.6
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.1e-166 590.9 585 54.7
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.9e-166 590.1 599 53.6
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.9e-166 590.1 590 55.3
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.9e-166 590.1 595 55.3
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.9e-166 590.1 599 55.6
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 7.1e-166 588.2 656 51.2
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 7.9e-165 584.7 585 55.4
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.9e-163 580.1 545 62.9
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 2.8e-162 576.2 543 58.7
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.8e-162 575.5 618 53.1
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.1e-161 574.3 692 50.3
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.3e-159 567.4 586 54.1
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.7e-159 567.0 601 53.4
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.9e-159 566.2 602 53.5
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 5.5e-158 562.0 620 51.8
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 7.2e-158 561.6 597 50.9
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 8.7e-156 554.7 608 52.6
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.3e-155 552.7 368 79.3
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.8e-154 549.7 585 53.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 4.5e-152 542.3 614 52.0
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.9e-152 542.0 590 51.0
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 5.5e-150 535.4 585 51.8
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.6e-149 533.9 588 53.4
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.1e-149 531.9 530 55.1
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.0e-148 531.2 589 52.5
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 8.8e-148 528.1 468 61.8
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 3.7e-146 522.7 674 48.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.4e-145 520.8 427 63.7
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.0e-144 516.9 608 50.0
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-143 514.2 590 51.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 6.5e-143 511.9 489 61.1
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.8e-140 503.8 483 57.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.1e-133 480.3 474 54.2
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 4.0e-132 476.1 598 48.8
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 3.7e-130 469.5 583 47.0
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.2e-128 464.5 603 45.4
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 8.3e-122 441.8 588 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 5.4e-121 439.1 596 44.5
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 9.1e-121 438.3 398 58.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 7.2e-118 428.7 404 59.7
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.2e-118 428.7 440 55.9
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.5e-118 428.3 356 62.4
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.6e-115 420.2 385 57.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.6e-112 411.0 465 49.0
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 7.3e-110 402.1 312 69.6
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.4e-108 397.9 360 59.7
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 2.2e-106 390.6 458 50.7
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.2e-100 369.4 357 57.7
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.0e-99 367.5 346 58.1
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.3e-94 349.7 408 50.0
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.6e-93 347.8 464 45.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 9.9e-91 338.6 590 37.8
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.4e-83 313.2 501 42.1
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.7e-80 303.9 440 43.9
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 5.1e-79 299.7 225 68.9
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.4e-66 256.1 214 60.7
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.2e-65 253.4 376 42.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 4.6e-64 250.0 208 64.9
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 3.0e-63 247.3 194 66.0
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.7e-63 245.7 225 59.6
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 9.9e-59 232.3 289 45.7
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.1e-57 228.8 206 55.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 4.2e-57 226.9 183 60.1
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 3.3e-54 217.2 499 36.9
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.7e-53 213.8 161 65.8
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-51 207.6 229 46.3
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.4e-51 207.2 355 41.7
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.6e-45 188.3 200 51.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 8.5e-42 176.0 203 46.8
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 2.5e-41 174.5 163 55.2
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 2.7e-40 171.0 166 56.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.7e-40 171.0 273 41.4
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.8e-39 168.3 166 55.4
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.9e-39 167.2 119 69.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 3.3e-38 164.1 234 43.6
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.9e-33 148.3 221 42.1
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.3e-29 133.3 197 44.2
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.8e-23 115.2 122 44.3
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 3.7e-21 107.5 185 42.2
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 1.8e-20 105.1 175 40.6
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 7.0e-20 103.2 134 43.3
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 9.1e-20 102.8 80 62.5
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 7.7e-19 99.8 171 38.6
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.7e-18 98.6 131 45.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.2e-18 98.2 77 63.6
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.5e-18 96.3 65 69.2
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.1e-17 95.9 73 64.4
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.1e-17 95.9 632 23.4
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.5e-17 95.5 78 60.3
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.9e-17 95.1 558 24.0
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 2.5e-17 94.7 108 49.1
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 7.2e-17 93.2 81 56.8
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-14 84.3 67 71.6
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 9.7e-14 82.8 165 35.8
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 1.3e-13 82.4 61 75.4
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 6.3e-13 80.1 67 61.2
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 8.2e-13 79.7 94 45.7
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 4.1e-12 77.4 202 33.2
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 5.0e-10 70.5 75 49.3
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.1e-09 69.3 53 64.2
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-09 69.3 57 63.2
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-09 68.6 56 58.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.6e-08 64.3 41 78.0
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 4.0e-07 60.8 260 25.0
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.8e-07 60.1 45 64.4
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 2.0e-06 58.5 59 52.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.4e-06 57.8 50 60.0
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 4.4e-06 57.4 116 37.9


User provided reference genes

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