Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.7e-74 282.0 144 100.0
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.4e-28 127.9 143 58.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.4e-28 127.5 143 58.0
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.9e-27 126.3 183 48.6
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.6e-26 123.2 184 46.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.3e-25 119.4 185 45.9
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.3e-25 119.4 185 45.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.0e-25 119.0 183 45.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 5.1e-25 118.2 186 45.2
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.1e-22 110.5 126 54.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-22 110.5 126 54.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-22 110.5 126 54.8
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.4e-22 110.2 186 43.5
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 4.0e-22 108.6 188 42.0
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 4.0e-22 108.6 188 42.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.6e-21 105.9 188 41.5
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.4e-21 105.5 188 41.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 9.9e-21 104.0 186 41.4
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.3e-20 103.6 188 40.4
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.7e-20 103.2 187 40.6
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.7e-20 103.2 187 40.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.9e-20 102.4 188 39.9
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.9e-20 102.4 187 40.6
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.8e-20 102.1 179 41.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.4e-19 100.1 188 39.9
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.9e-19 99.8 187 40.6
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.9e-19 99.8 188 40.4
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-19 99.8 188 40.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.4e-19 99.4 190 42.1
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-19 98.6 175 41.1
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.2e-19 98.6 175 41.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.2e-19 98.6 191 38.2
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 5.4e-19 98.2 185 41.6
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 5.4e-19 98.2 185 41.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.4e-19 98.2 185 41.6
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.2e-18 97.1 186 38.2
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.6e-18 96.7 188 38.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.6e-18 96.7 188 38.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.6e-18 96.7 188 38.3
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.6e-18 96.7 188 38.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-18 96.7 204 37.7
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.6e-18 96.7 188 38.3
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.7e-18 95.9 183 40.4
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.7e-18 95.9 189 39.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.5e-18 95.5 188 38.8
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 4.6e-18 95.1 188 39.9
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.6e-18 95.1 186 37.6
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 6.0e-18 94.7 187 38.5
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 6.0e-18 94.7 189 39.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 7.8e-18 94.4 175 39.4
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 7.8e-18 94.4 189 38.6
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.0e-17 94.0 188 37.2
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.7e-17 93.2 188 38.8
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.7e-17 93.2 217 36.4
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.3e-17 92.8 193 38.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.9e-17 92.0 188 38.8
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.9e-17 92.0 188 39.9
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.9e-17 92.0 185 40.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.6e-17 91.3 206 36.9
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.6e-17 91.3 190 38.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 8.7e-17 90.9 187 38.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 8.7e-17 90.9 189 39.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 8.7e-17 90.9 188 38.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.1e-16 90.5 187 38.0
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-16 90.5 188 39.4
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.5e-16 90.1 187 39.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.9e-16 89.7 188 36.2
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.5e-16 89.4 186 38.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.5e-16 89.4 186 38.7
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.5e-16 89.4 193 36.3
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 9.6e-16 87.4 189 36.5
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 9.6e-16 87.4 61 73.8
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 9.6e-16 87.4 185 38.9
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.6e-15 86.7 178 36.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-15 86.7 126 46.8
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.1e-15 86.3 189 36.5
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.1e-15 86.3 214 34.6
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 2.8e-15 85.9 63 74.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.8e-15 85.9 167 40.7
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 3.6e-15 85.5 59 74.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.6e-15 85.5 188 37.2
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.6e-15 85.5 188 34.6
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.8e-15 85.1 185 38.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 4.8e-15 85.1 190 39.5
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 6.2e-15 84.7 185 38.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 8.1e-15 84.3 59 74.6
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-14 84.0 181 35.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.1e-14 84.0 188 38.3
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.4e-14 83.6 58 74.1
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.4e-14 82.8 185 38.4
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.4e-14 82.8 187 36.9
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.4e-14 82.8 184 37.5
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.4e-14 82.8 222 32.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 4.0e-14 82.0 59 69.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 4.0e-14 82.0 59 71.2
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 5.3e-14 81.6 59 71.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 5.3e-14 81.6 59 71.2
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 6.9e-14 81.3 59 71.2
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 6.9e-14 81.3 59 71.2
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 9.0e-14 80.9 59 71.2
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.2e-13 80.5 59 72.9
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.2e-13 80.5 189 35.4
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.5e-13 80.1 59 69.5
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.0e-13 79.7 187 36.4
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.6e-13 79.3 55 72.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.6e-13 79.3 55 72.7
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.4e-13 79.0 180 35.0
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 7.6e-13 77.8 55 72.7
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.6e-13 77.8 55 70.9
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.7e-12 76.6 59 67.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 6.4e-12 74.7 188 37.2
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.1e-11 73.9 188 36.7
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-11 73.2 59 64.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.4e-11 72.8 188 34.0
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.2e-11 72.4 188 34.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.2e-11 72.0 192 33.9
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 5.4e-11 71.6 122 43.4
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 5.4e-11 71.6 193 35.2
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.2e-10 70.5 189 34.9
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-10 70.5 203 32.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.1e-10 69.7 188 35.6
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 2.7e-10 69.3 187 35.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 6.0e-10 68.2 188 34.0
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.0e-09 67.4 188 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.9e-09 65.5 189 33.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.9e-09 65.5 51 66.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.1e-08 63.9 168 32.7
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.5e-08 63.5 36 88.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 5.6e-08 61.6 36 83.3
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 7.4e-08 61.2 36 80.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 6.2e-07 58.2 36 80.6
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 8.1e-07 57.8 36 77.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 8.1e-07 57.8 37 70.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.4e-06 57.0 36 77.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.1e-06 55.8 36 75.0
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.3e-06 55.1 38 76.3


User provided reference genes

Program Settings