Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A02p04800 Brassica napus HOM05D003172 ORTHO05D003708 8.3e-169 597.0 319 100.0
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 7.4e-93 344.7 479 50.3
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 5.0e-89 332.0 479 49.1
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 1.9e-88 330.1 481 47.8
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 1.0e-86 324.3 479 47.8
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 2.3e-86 323.2 479 47.8
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-85 320.5 479 47.6
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 1.5e-85 320.5 479 47.6
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 2.5e-85 319.7 479 47.4
BolC2t06884H Brassica oleracea HOM05D003172 ORTHO05D003708 9.7e-85 317.8 231 77.9
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 1.0e-81 307.8 481 45.5
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 2.5e-80 303.1 475 46.7
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 2.5e-80 303.1 405 51.4
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 3.2e-80 302.8 481 46.6
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 5.1e-78 295.4 471 46.5
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 5.1e-78 295.4 471 46.5
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 2.8e-76 289.7 471 46.5
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 1.8e-75 287.0 471 46.3
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 4.1e-75 285.8 478 44.6
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 6.9e-75 285.0 479 44.5
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 2.2e-73 280.0 473 45.2
BcaC03g13584 Brassica carinata HOM05D003172 ORTHO05D003708 5.3e-59 232.3 208 67.8
BcaNung04945 Brassica carinata HOM05D003172 ORTHO05D003708 4.5e-50 202.6 385 41.6
C02p09760 Brassica napus HOM05D003172 ORTHO05D003708 5.9e-50 202.2 166 70.5
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 4.7e-47 192.6 477 36.7
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.4e-46 191.0 479 36.1
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 7.0e-35 152.1 493 33.1
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 7.0e-35 152.1 493 33.1
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 3.9e-33 146.4 502 32.1
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.9e-32 144.1 498 32.1
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 3.3e-32 143.3 487 32.9
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 4.3e-32 142.9 500 32.2
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 4.3e-32 142.9 498 32.1
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 5.6e-32 142.5 507 33.1
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 7.3e-32 142.1 499 31.9
BraA02t05438Z Brassica rapa HOM05D003172 ORTHO05D003708 1.2e-31 141.4 274 40.1
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 2.1e-31 140.6 496 31.5
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 2.8e-31 140.2 473 32.8
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 3.6e-31 139.8 497 31.6
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 4.7e-31 139.4 512 31.8
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 1.8e-30 137.5 505 32.1
THA.LOC104801500 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.3e-30 137.1 412 35.2
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.3e-30 137.1 412 35.2
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 3.1e-30 136.7 496 31.9
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 3.1e-30 136.7 508 32.1
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 5.2e-30 136.0 508 32.3
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 6.8e-30 135.6 492 30.9
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 8.9e-30 135.2 508 31.5
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 8.9e-30 135.2 507 31.6
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 1.5e-29 134.4 498 31.9
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 3.4e-29 133.3 505 30.9
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 3.4e-29 133.3 509 31.4
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 5.8e-29 132.5 497 30.8
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 7.5e-29 132.1 412 35.0
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 1.3e-28 131.3 506 30.6
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 1.3e-28 131.3 491 30.5
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 2.2e-28 130.6 497 30.2
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 8.3e-28 128.6 513 29.6
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 8.3e-28 128.6 503 30.6
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 1.9e-27 127.5 515 30.7
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 1.2e-26 124.8 436 31.9
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 1.2e-26 124.8 507 31.8
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 6.0e-26 122.5 497 29.6
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 6.0e-26 122.5 507 30.4
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 6.0e-26 122.5 499 27.9
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 1.0e-25 121.7 508 29.5
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 2.3e-25 120.6 493 30.2
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 5.0e-25 119.4 505 29.9
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 8.6e-25 118.6 516 29.3
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 8.6e-25 118.6 505 30.5
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 1.1e-24 118.2 508 29.9
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 1.1e-24 118.2 515 29.5
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 1.5e-24 117.9 506 28.7
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 1.9e-24 117.5 499 29.7
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.9e-24 117.5 512 30.1
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 3.3e-24 116.7 517 29.2
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 9.5e-24 115.2 508 29.7
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 2.1e-23 114.0 516 28.7
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 3.6e-23 113.2 168 47.0
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 4.7e-23 112.8 168 46.4
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 4.7e-23 112.8 515 28.9
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 4.7e-23 112.8 503 29.8
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 6.2e-23 112.5 168 46.4
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 6.2e-23 112.5 168 46.4
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 1.1e-22 111.7 168 45.8
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 1.4e-22 111.3 168 45.8
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 1.4e-22 111.3 516 29.1
Nitab4.5_0000001g0360 Nicotiana tabacum HOM05D003172 ORTHO05D003708 1.8e-22 110.9 425 28.2
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 2.3e-22 110.5 168 45.2
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 3.1e-22 110.2 168 45.8
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 3.1e-22 110.2 168 45.8
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 3.1e-22 110.2 168 45.8
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 3.1e-22 110.2 168 45.8
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 4.0e-22 109.8 168 45.2
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 5.2e-22 109.4 478 28.0
AL6G29450 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 6.8e-22 109.0 168 45.8
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 6.8e-22 109.0 507 28.6
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 6.8e-22 109.0 171 45.0
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 6.8e-22 109.0 171 45.0
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 6.8e-22 109.0 168 45.2
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 8.9e-22 108.6 379 31.9
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 8.9e-22 108.6 168 45.2
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 8.9e-22 108.6 170 44.7
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 8.9e-22 108.6 168 45.8
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 8.9e-22 108.6 171 44.4
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 8.9e-22 108.6 168 45.2
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 1.2e-21 108.2 168 45.2
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 1.2e-21 108.2 168 44.6
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.2e-21 108.2 168 44.6
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 1.2e-21 108.2 168 44.6
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 1.2e-21 108.2 168 44.6
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.5e-21 107.8 168 44.6
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.5e-21 107.8 168 44.6
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 1.5e-21 107.8 168 44.0
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 1.5e-21 107.8 168 44.6
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 1.5e-21 107.8 168 44.6
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 2.0e-21 107.5 171 45.0
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 2.0e-21 107.5 315 34.6
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 2.0e-21 107.5 168 44.6
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 2.6e-21 107.1 168 44.0
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 3.4e-21 106.7 396 32.3
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 3.4e-21 106.7 171 43.9
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 1.3e-20 104.8 161 44.7
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 1.3e-20 104.8 171 43.3
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 1.7e-20 104.4 493 28.8
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 2.9e-20 103.6 151 45.7
BcaB05g23297 Brassica carinata HOM05D003172 ORTHO05D003708 3.7e-20 103.2 119 58.8
CARHR217100 Cardamine hirsuta HOM05D003172 ORTHO05D003708 3.7e-20 103.2 98 61.2
CDE04G1193 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 4.9e-20 102.8 161 44.1
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 4.9e-20 102.8 403 31.5
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 6.4e-20 102.4 95 58.9
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 6.4e-20 102.4 171 42.1
Lsat_1_v5_gn_8_47041 Lactuca sativa HOM05D003172 ORTHO05D003708 1.1e-19 101.7 95 60.0
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.4e-19 101.3 161 43.5
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 2.4e-19 100.5 168 41.7
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 2.4e-19 100.5 168 41.7
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 3.2e-19 100.1 185 40.0
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 4.1e-19 99.8 161 42.9
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 7.1e-19 99.0 474 29.1
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 3.5e-18 96.7 164 40.9
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 7.8e-18 95.5 365 32.6
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 7.8e-18 95.5 109 54.1
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 1.0e-17 95.1 164 40.2
SEGI_39352 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 1.3e-17 94.7 93 57.0
BcaNung04946 Brassica carinata HOM05D003172 ORTHO05D003708 3.9e-17 93.2 56 82.1
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 3.9e-17 93.2 163 41.7
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 5.1e-17 92.8 161 41.0
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 5.1e-17 92.8 479 26.5
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 6.6e-17 92.4 361 31.3
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 8.6e-17 92.0 466 26.0
CBR_g17178 Chara braunii HOM05D003172 ORTHO05D003708 8.6e-17 92.0 197 37.6
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 1.1e-16 91.7 398 30.2
Lsat_1_v5_gn_8_137421 Lactuca sativa HOM05D000658 ORTHO05D000826 3.3e-16 90.1 93 57.0
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 4.3e-16 89.7 161 38.5
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 5.6e-16 89.4 118 49.2
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 9.5e-16 88.6 161 37.9
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 2.1e-15 87.4 84 59.5
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 2.8e-15 87.0 187 37.4
Cpa.g.c39665 Carica papaya HOM05D003172 ORTHO05D003708 1.4e-14 84.7 50 84.0
HPP92_012145 Vanilla planifolia HOM05D003172 ORTHO05D003708 8.9e-14 82.0 161 36.0
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 4.4e-13 79.7 493 25.8
Lsat_1_v5_gn_8_48920 Lactuca sativa HOM05D003172 ORTHO05D003708 1.3e-12 78.2 180 37.2
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 3.7e-12 76.6 60 63.3
SHI23375 Sapria himalayana HOM05D003172 ORTHO05D003708 4.9e-12 76.3 84 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 1.3e-09 68.2 60 60.0
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.3e-09 68.2 91 46.2
MCO08G071 Micromonas commoda HOM05D003172 ORTHO05D003708 6.6e-09 65.9 140 33.6
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 1.2e-07 61.6 375 25.3
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 6.2e-07 59.3 388 26.3
Cpa.g.c39914 Carica papaya HOM05D003172 ORTHO05D003708 4.0e-06 56.6 37 73.0
Cre04.g227350 Chlamydomonas reinhardtii HOM05D003172 ORTHO05D003708 6.8e-06 55.8 89 38.2


User provided reference genes

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