Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 6.4e-23 109.8 51 100.0
A02p03100 Brassica napus HOM05D005508 ORTHO05D006882 6.4e-23 109.8 51 100.0
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 6.4e-23 109.8 51 100.0
C09p61540 Brassica napus HOM05D005508 ORTHO05D006882 6.4e-23 109.8 51 100.0
C03p08200 Brassica napus HOM05D005508 ORTHO05D006882 2.4e-22 107.8 51 96.1
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 2.4e-22 107.8 51 96.1
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 9.2e-22 105.9 49 93.9
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 1.0e-20 102.4 49 93.9
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 2.3e-20 101.3 51 90.2
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 2.3e-20 101.3 51 92.2
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 3.0e-20 100.9 51 92.2
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 8.6e-20 99.4 49 89.8
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 1.1e-19 99.0 49 83.7
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 1.5e-19 98.6 51 88.2
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 1.5e-19 98.6 49 81.6
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 2.5e-19 97.8 51 84.3
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 2.5e-19 97.8 49 87.8
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 3.3e-19 97.4 51 82.4
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 3.3e-19 97.4 51 88.2
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 4.3e-19 97.1 51 86.3
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.3e-19 97.1 51 84.3
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 4.3e-19 97.1 49 85.7
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 4.3e-19 97.1 49 85.7
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 4.3e-19 97.1 49 81.6
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 5.6e-19 96.7 51 84.3
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 5.6e-19 96.7 51 86.3
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 7.3e-19 96.3 51 84.3
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.3e-19 96.3 49 83.7
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.3e-19 96.3 49 83.7
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 1.2e-18 95.5 49 85.7
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 1.6e-18 95.1 49 83.7
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 2.1e-18 94.7 49 81.6
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 2.1e-18 94.7 49 85.7
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 2.1e-18 94.7 51 82.4
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 2.1e-18 94.7 49 79.6
TAR622G0687 Trochodendron aralioides HOM05D005508 ORTHO05D006882 2.1e-18 94.7 51 84.3
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 2.8e-18 94.4 49 81.6
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 2.8e-18 94.4 51 80.4
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 2.8e-18 94.4 49 81.6
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.8e-18 94.4 49 81.6
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 2.8e-18 94.4 49 83.7
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 3.6e-18 94.0 48 85.4
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 3.6e-18 94.0 51 78.4
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 3.6e-18 94.0 49 81.6
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 4.7e-18 93.6 51 84.3
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 4.7e-18 93.6 48 87.5
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 6.2e-18 93.2 49 81.6
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 6.2e-18 93.2 51 80.4
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 6.2e-18 93.2 49 83.7
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 6.2e-18 93.2 51 80.4
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 8.1e-18 92.8 45 86.7
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 8.1e-18 92.8 49 79.6
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 8.1e-18 92.8 49 81.6
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 8.1e-18 92.8 49 81.6
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 8.1e-18 92.8 49 81.6
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 1.1e-17 92.4 50 82.0
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.1e-17 92.4 47 87.2
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 1.4e-17 92.0 51 78.4
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 1.4e-17 92.0 51 76.5
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 1.4e-17 92.0 51 76.5
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 1.4e-17 92.0 51 80.4
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 1.4e-17 92.0 49 77.6
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 1.8e-17 91.7 49 81.6
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 2.4e-17 91.3 51 76.5
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 2.4e-17 91.3 49 83.7
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 2.4e-17 91.3 51 80.4
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 3.1e-17 90.9 49 81.6
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 3.1e-17 90.9 51 80.4
HPP92_025854 Vanilla planifolia HOM05D005508 ORTHO05D006882 4.0e-17 90.5 49 79.6
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 6.8e-17 89.7 49 75.5
TPR.G17839 Trifolium pratense HOM05D005508 ORTHO05D006882 6.8e-17 89.7 51 78.4
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 8.9e-17 89.4 51 78.4
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 8.9e-17 89.4 51 78.4
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 8.9e-17 89.4 49 79.6
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 1.5e-16 88.6 49 77.6
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 1.5e-16 88.6 49 77.6
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 1.5e-16 88.6 50 78.0
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 1.5e-16 88.6 50 78.0
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 1.5e-16 88.6 49 73.5
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 2.0e-16 88.2 51 76.5
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 2.0e-16 88.2 51 78.4
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 2.0e-16 88.2 52 75.0
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 2.6e-16 87.8 51 76.5
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 2.6e-16 87.8 51 78.4
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 3.4e-16 87.4 49 77.6
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 3.4e-16 87.4 49 77.6
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 3.4e-16 87.4 49 73.5
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 9.9e-16 85.9 49 77.6
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 9.9e-16 85.9 49 77.6
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 9.9e-16 85.9 51 76.5
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 1.7e-15 85.1 49 75.5
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 2.2e-15 84.7 49 75.5
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 2.9e-15 84.3 51 70.6
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 2.9e-15 84.3 51 72.5
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 3.8e-15 84.0 51 74.5
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 3.8e-15 84.0 51 74.5
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 3.8e-15 84.0 51 74.5
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 4.9e-15 83.6 49 75.5
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 4.2e-14 80.5 41 85.4
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 4.2e-14 80.5 48 75.0
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 3.9e-12 73.9 40 77.5
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 6.2e-10 66.6 42 64.3
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 1.1e-09 65.9 50 54.0
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 1.4e-09 65.5 38 65.8
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 1.8e-09 65.1 48 58.3
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 1.8e-09 65.1 42 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 5.3e-09 63.5 50 56.0
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 1.4e-06 55.5 49 53.1
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 9.3e-06 52.8 23 91.3


User provided reference genes

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