Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1547.3 811 100.0
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1547.3 811 100.0
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1532.7 810 98.9
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1498.0 807 97.5
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1434.1 810 93.1
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1412.9 808 91.5
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1412.5 810 91.4
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1409.4 810 91.4
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1402.5 808 90.5
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1397.5 808 90.8
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1370.5 810 90.6
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1335.1 808 87.1
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 809 79.1
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1127.9 808 71.2
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1124.4 811 72.3
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1119.8 815 72.0
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1116.7 816 73.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1109.7 789 73.6
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1109.4 815 73.7
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1108.6 815 71.7
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1104.0 784 73.6
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1099.3 746 75.9
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1099.3 787 70.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1097.8 749 73.4
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1097.4 754 73.9
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1094.7 819 71.6
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1094.3 810 70.6
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1090.9 751 73.6
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1088.6 810 68.6
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1087.4 806 70.2
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1085.1 814 71.7
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1084.7 821 70.8
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1084.3 781 72.7
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1084.3 747 73.8
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1083.6 811 69.9
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1083.6 814 71.1
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1083.6 746 73.7
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1080.9 778 73.0
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1080.1 817 70.9
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1078.2 815 70.9
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1077.8 810 68.9
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1075.8 803 69.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1075.5 817 71.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 1.1e-311 1072.8 783 71.5
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 1.7e-311 1072.4 783 72.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 5.0e-311 1070.8 778 69.0
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 8.3e-311 1070.1 745 74.1
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 2.4e-310 1068.5 807 70.0
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 9.3e-310 1066.6 811 68.6
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 9.3e-310 1066.6 788 72.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 1.2e-309 1066.2 807 70.9
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 4.6e-309 1064.3 752 74.5
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 4.6e-309 1064.3 803 69.7
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 4.6e-309 1064.3 782 71.9
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 7.9e-309 1063.5 778 69.5
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 1.3e-308 1062.8 783 72.2
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.3e-308 1062.0 810 69.5
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 5.1e-308 1060.8 810 69.4
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 2.8e-306 1055.0 781 70.2
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 8.2e-306 1053.5 781 70.3
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 3.1e-305 1051.6 788 70.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.2e-304 1049.7 781 71.3
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 1.5e-304 1049.3 746 73.2
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 1.5e-304 1049.3 747 73.6
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 5.9e-304 1047.3 818 69.7
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 1.3e-303 1046.2 781 69.5
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 3.6e-301 1038.1 804 68.5
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 3.6e-301 1038.1 790 69.1
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 1.5e-299 1032.7 806 65.4
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 1.7e-295 1019.2 798 67.7
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 1.5e-291 1006.1 812 67.5
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 1.3e-287 993.0 803 64.1
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 4.2e-286 988.0 764 65.6
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 4.4e-283 978.0 763 65.9
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.1e-281 973.4 751 64.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 4.1e-281 971.5 748 66.3
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 4.5e-280 968.0 778 67.9
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 5.9e-280 967.6 784 67.2
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 8.5e-279 963.8 748 66.4
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 9.4e-278 960.3 736 64.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 1.8e-276 956.1 794 65.5
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 3.0e-276 955.3 813 62.4
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 1.5e-275 953.0 749 67.3
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 4.8e-274 948.0 773 63.6
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.9e-241 839.7 694 65.1
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.4e-236 823.5 477 82.6
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 5.1e-231 805.1 508 76.8
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 5.8e-211 738.4 753 53.3
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.3e-210 737.3 539 71.2
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.8e-207 726.9 531 69.3
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 6.5e-202 708.4 538 67.5
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 4.6e-200 702.2 799 48.7
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 6.1e-192 675.2 506 71.7
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.7e-189 667.2 748 48.8
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.3e-159 567.0 766 42.3
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 9.8e-158 561.6 430 72.6
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.8e-157 560.1 746 44.1
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.0e-144 515.4 432 63.9
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.5e-139 500.0 405 65.9
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 3.2e-132 476.9 474 57.2
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 6.8e-127 459.1 749 36.6
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 9.2e-116 422.2 370 65.9
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 2.3e-106 391.0 281 71.9
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 2.1e-96 357.8 208 83.7
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.9e-93 346.7 201 82.1
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.1e-89 335.5 291 59.5
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 7.4e-89 332.8 255 68.2
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.8e-87 328.2 234 73.1
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.1e-84 316.2 225 69.3
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.8e-82 311.6 196 77.0
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.3e-81 307.0 225 70.2
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 6.9e-79 299.7 280 65.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.2e-46 192.6 129 71.3
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.6e-46 192.2 111 82.0
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.3e-45 189.1 113 77.0
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.2e-44 184.1 215 58.6
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 7.7e-38 163.3 197 48.2
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.1e-35 155.2 102 71.6
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.5e-33 149.1 87 81.6
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 7.0e-31 140.2 102 64.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.8e-27 128.3 73 74.0
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.7e-22 111.7 167 40.7
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.3e-20 104.8 82 65.9
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.8e-19 101.7 88 55.7
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 3.1e-18 98.2 61 75.4
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 9.8e-17 93.2 63 69.8
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.3e-16 92.8 74 62.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.4e-15 89.4 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.0e-14 84.0 59 74.6
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.3e-12 78.2 49 77.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 8.1e-11 73.6 72 51.4
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.1e-11 73.6 72 51.4
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 8.9e-10 70.1 230 25.7
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 1.4e-07 62.8 200 25.5
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 5.4e-07 60.8 228 24.6
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 5.4e-07 60.8 40 67.5
BcaC09g48027 Brassica carinata HOM05D000141 ORTHO05D023630 3.5e-06 58.2 31 93.5


User provided reference genes

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