Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 5.6e-130 467.6 235 100.0
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.2e-113 413.3 211 98.1
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-109 400.2 217 94.0
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-109 399.8 205 97.6
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.9e-109 399.4 205 97.6
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 9.3e-101 370.5 230 82.2
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 9.6e-98 360.5 209 86.6
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.3e-97 360.1 211 84.4
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 4.8e-97 358.2 209 86.1
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.1e-96 357.1 209 86.1
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.4e-96 356.7 211 85.3
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 6.9e-96 354.4 210 83.8
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.4e-93 346.7 234 77.4
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 3.5e-92 342.0 211 81.0
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 5.1e-91 338.2 212 80.7
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.1e-88 330.5 260 68.8
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 7.6e-79 297.7 223 67.7
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.0e-78 297.4 197 77.7
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-77 293.5 151 93.4
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.5e-77 292.7 208 73.1
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 6.0e-76 288.1 208 69.2
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 6.0e-76 288.1 195 72.8
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-75 287.0 194 72.2
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.1e-74 283.9 194 71.6
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-74 283.9 194 71.6
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 4.3e-74 282.0 222 64.4
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 7.4e-74 281.2 218 66.1
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 7.4e-74 281.2 211 65.4
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.3e-73 280.4 210 66.2
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.6e-73 280.0 211 65.9
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 4.8e-73 278.5 210 66.2
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.1e-72 277.3 183 75.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.4e-72 276.2 173 76.9
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.1e-72 275.8 173 78.0
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 4.1e-72 275.4 176 75.0
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 6.9e-72 274.6 218 64.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 6.9e-72 274.6 197 68.0
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 1.2e-71 273.9 182 73.1
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 3.4e-71 272.3 170 75.9
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 4.5e-71 271.9 182 74.7
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.9e-71 271.6 171 77.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 5.9e-71 271.6 194 70.1
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 5.9e-71 271.6 158 82.9
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 7.6e-71 271.2 171 76.6
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.0e-70 270.8 172 75.6
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-70 270.4 173 75.7
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.3e-70 270.4 179 72.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 2.2e-70 269.6 168 76.2
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.9e-70 269.2 168 75.6
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 5.0e-70 268.5 174 76.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 8.4e-70 267.7 170 75.3
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.9e-69 266.5 201 67.7
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 2.5e-69 266.2 190 67.4
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 2.5e-69 266.2 172 74.4
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 5.5e-69 265.0 168 74.4
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 2.1e-68 263.1 191 71.2
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.1e-68 263.1 171 74.3
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.7e-68 262.7 160 78.1
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.7e-68 262.7 160 78.1
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 3.9e-67 258.8 203 65.0
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 5.1e-67 258.5 156 78.2
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 8.7e-67 257.7 156 78.2
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 2.5e-66 256.1 202 65.3
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.6e-65 253.4 168 71.4
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.6e-65 253.4 156 75.0
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 77.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 77.3
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 77.3
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 2.8e-65 252.7 168 71.4
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 4.8e-65 251.9 156 75.6
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 8.2e-65 251.1 153 77.1
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 8.2e-65 251.1 155 75.5
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.1e-64 250.8 160 73.8
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.4e-64 250.4 154 75.3
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.8e-64 250.0 160 74.4
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.4e-64 249.6 157 74.5
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 4.1e-64 248.8 158 74.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.1e-64 248.8 207 61.8
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.5e-63 246.9 159 71.7
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.6e-63 246.1 160 73.8
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.6e-63 246.1 160 73.8
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 4.5e-63 245.4 188 66.0
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-63 245.0 159 73.6
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 5.9e-63 245.0 154 74.0
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 7.7e-63 244.6 182 68.7
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.0e-62 244.2 154 73.4
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.3e-62 243.8 161 73.3
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.7e-62 243.4 177 67.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.5e-62 241.1 175 69.1
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 3.2e-61 239.2 191 64.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 3.2e-61 239.2 184 65.8
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.2e-61 238.8 122 99.2
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 4.2e-61 238.8 154 71.4
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 5.5e-61 238.4 172 67.4
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.2e-60 237.3 157 69.4
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.1e-60 236.5 248 53.2
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 7.9e-60 234.6 160 71.9
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.3e-59 233.0 154 69.5
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 3.0e-59 232.6 160 68.8
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.1e-58 230.7 155 71.0
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 2.9e-54 216.1 155 67.7
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 3.8e-54 215.7 198 56.6
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.1e-53 214.2 152 66.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 9.4e-53 211.1 151 66.2
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.6e-52 210.3 154 65.6
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.6e-52 209.1 142 71.8
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 2.8e-49 199.5 120 80.0
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 4.8e-49 198.7 160 59.4
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 2.4e-48 196.4 143 66.4
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 9.1e-48 194.5 175 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.7e-46 190.3 144 61.1
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.7e-41 172.6 153 56.9
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.0e-38 164.5 144 60.4
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 4.7e-36 155.6 166 48.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.0e-35 152.5 87 79.3
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-28 130.6 138 52.2
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-28 130.6 138 52.2
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 8.8e-27 124.8 85 74.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.0e-26 123.6 119 47.1
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.0e-23 113.6 116 44.0
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 4.5e-23 112.5 65 80.0
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.1e-21 107.8 120 45.0
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 9.5e-21 104.8 134 39.6
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.6e-15 87.4 58 74.1
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 7.8e-15 85.1 113 44.2
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 2.0e-10 70.5 37 75.7
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 3.7e-09 66.2 96 39.6
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 9.2e-08 61.6 43 69.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.0e-07 60.5 137 29.9
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.0e-07 60.5 137 29.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 7.8e-07 58.5 114 33.3
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.6e-06 55.5 114 30.7


User provided reference genes

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