Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 5.6e-150 534.3 271 100.0
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 3.1e-148 528.5 269 99.3
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 6.0e-144 514.2 269 97.0
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 6.0e-144 514.2 269 97.0
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 4.3e-142 508.1 271 95.9
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 9.9e-139 496.9 273 92.7
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.2e-128 463.4 283 84.1
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 2.1e-128 462.6 280 84.3
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 2.1e-128 462.6 280 84.3
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 7.8e-128 460.7 272 84.9
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 1.0e-127 460.3 283 83.7
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 1.0e-127 460.3 283 83.4
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 1.3e-127 459.9 280 83.6
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 1.3e-127 459.9 272 84.9
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 6.6e-127 457.6 272 84.6
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 9.6e-126 453.8 282 83.3
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 4.8e-125 451.4 275 82.9
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 4.5e-123 444.9 286 82.2
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 7.6e-123 444.1 274 82.5
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 1.1e-113 413.7 270 78.1
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 3.2e-105 385.6 272 72.1
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 9.3e-105 384.0 272 71.7
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 2.1e-104 382.9 272 71.3
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 2.7e-104 382.5 272 71.7
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.7e-104 382.5 272 71.0
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 4.6e-104 381.7 272 71.7
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 2.3e-103 379.4 271 71.2
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 6.7e-103 377.9 272 71.3
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 8.7e-103 377.5 273 71.8
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 1.9e-102 376.3 273 70.0
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 2.5e-102 375.9 274 70.4
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 4.3e-102 375.2 273 71.1
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 5.7e-102 374.8 271 71.2
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 1.3e-101 373.6 284 69.4
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 2.2e-101 372.9 268 71.6
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 2.8e-101 372.5 273 70.3
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 4.8e-101 371.7 280 67.5
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 8.2e-101 370.9 272 71.0
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 1.1e-100 370.5 273 71.4
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 1.1e-100 370.5 273 71.4
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 1.8e-100 369.8 267 69.7
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 2.4e-100 369.4 283 68.2
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 9.0e-100 367.5 257 70.4
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 9.0e-100 367.5 272 67.3
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 2.0e-99 366.3 284 64.4
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 2.6e-99 365.9 280 67.9
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 3.4e-99 365.5 261 72.4
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 5.9e-99 364.8 271 69.7
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 1.0e-98 364.0 257 69.6
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 1.0e-98 364.0 273 68.5
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.3e-98 363.6 279 67.7
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 1.7e-98 363.2 272 69.5
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 2.9e-98 362.5 272 68.0
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.0e-98 361.7 279 67.4
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 5.0e-98 361.7 273 70.0
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 1.1e-97 360.5 287 66.9
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 1.4e-97 360.1 253 70.4
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 1.9e-97 359.8 266 69.5
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 2.5e-97 359.4 273 69.2
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 3.2e-97 359.0 279 67.0
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 3.2e-97 359.0 279 67.0
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 4.2e-97 358.6 268 67.2
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 9.3e-97 357.5 281 66.9
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 9.3e-97 357.5 281 66.9
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 2.7e-96 355.9 271 66.4
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 2.7e-96 355.9 225 76.4
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 2.7e-96 355.9 255 68.6
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 2.7e-96 355.9 255 68.6
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 2.7e-96 355.9 283 66.8
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.0e-95 354.0 228 72.4
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 1.4e-95 353.6 272 65.8
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.8e-95 353.2 255 66.3
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 3.9e-95 352.1 268 66.0
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 5.1e-95 351.7 265 65.3
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 6.7e-95 351.3 283 65.7
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 8.8e-95 350.9 286 63.3
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 8.8e-95 350.9 228 72.4
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 1.5e-94 350.1 252 69.0
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 1.5e-94 350.1 273 65.9
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 1.5e-94 350.1 265 64.9
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 1.9e-94 349.7 267 67.0
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 1.9e-94 349.7 273 66.7
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 2.5e-94 349.4 292 63.7
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 2.5e-94 349.4 244 70.5
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 3.3e-94 349.0 281 64.8
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 5.7e-94 348.2 277 67.9
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 7.4e-94 347.8 251 68.5
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 9.7e-94 347.4 272 65.8
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 9.7e-94 347.4 267 65.5
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 1.3e-93 347.1 233 74.2
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 2.2e-93 346.3 228 74.1
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 3.7e-93 345.5 223 72.6
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 3.7e-93 345.5 270 67.8
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 4.8e-93 345.1 305 62.3
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 6.3e-93 344.7 284 64.1
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 2.4e-92 342.8 268 66.0
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 3.1e-92 342.4 275 65.5
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 3.1e-92 342.4 263 67.7
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 4.1e-92 342.0 274 61.7
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 4.1e-92 342.0 267 65.9
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 5.3e-92 341.7 251 66.1
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 6.9e-92 341.3 251 68.5
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 9.1e-92 340.9 275 64.4
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 1.2e-91 340.5 284 63.7
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 2.0e-91 339.7 269 65.8
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 2.6e-91 339.3 285 63.9
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 2.6e-91 339.3 285 63.9
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 1.7e-90 336.7 275 62.9
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 1.7e-90 336.7 221 73.8
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 2.9e-90 335.9 272 61.8
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 6.5e-90 334.7 270 65.2
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 7.2e-89 331.3 271 63.1
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 2.1e-88 329.7 221 71.0
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 2.1e-88 329.7 271 63.8
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 6.1e-88 328.2 259 62.9
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 6.1e-88 328.2 276 59.4
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 5.7e-86 321.6 227 71.4
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 5.7e-86 321.6 205 73.2
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 1.7e-85 320.1 274 58.4
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 1.7e-85 320.1 286 59.8
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 6.3e-85 318.2 274 60.9
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 8.2e-85 317.8 256 60.9
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.1e-84 317.4 268 62.3
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 3.4e-83 312.4 268 61.6
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 7.7e-83 311.2 290 57.9
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 3.3e-78 295.8 275 59.3
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 9.7e-78 294.3 280 54.3
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 2.2e-77 293.1 230 63.5
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 4.8e-77 292.0 223 65.9
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 4.1e-76 288.9 215 63.3
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.7e-72 276.2 227 57.7
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 8.8e-71 271.2 233 53.6
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.6e-70 269.6 237 54.9
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 2.7e-67 259.6 241 54.4
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 2.7e-67 259.6 208 61.1
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 2.7e-67 259.6 172 75.6
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 1.3e-66 257.3 271 52.8
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 6.5e-66 255.0 212 59.9
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 5.5e-65 251.9 208 57.2
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 4.0e-55 219.2 254 50.8
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 3.7e-53 212.6 206 51.5
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 3.7e-53 212.6 152 69.7
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 5.6e-49 198.7 175 60.0
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.2e-46 191.0 147 63.3
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 9.8e-46 188.0 207 45.9
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 1.1e-44 184.5 211 45.0
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 1.6e-32 144.1 89 76.4
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 1.5e-17 94.4 63 69.8
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.1e-12 78.2 73 57.5
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 2.4e-12 77.0 112 40.2
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 2.1e-11 73.9 51 68.6


User provided reference genes

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