Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-79 299.7 153 100.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.0e-79 297.7 153 98.7
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 8.5e-79 297.0 153 98.7
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 8.5e-79 297.0 153 98.7
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.5e-75 285.4 153 94.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 4.2e-70 268.1 153 88.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 3.0e-60 235.3 153 81.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-54 216.1 153 75.2
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-54 216.1 153 75.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-54 216.1 153 75.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-54 216.1 153 75.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.5e-54 215.7 153 75.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-54 215.3 153 75.8
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-54 215.3 153 75.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 6.1e-53 211.1 153 73.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 8.0e-53 210.7 153 74.5
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.4e-52 209.9 153 73.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.4e-52 209.9 153 73.2
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.8e-52 209.5 153 73.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.2e-52 208.0 153 73.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.2e-52 208.0 153 73.9
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 6.8e-52 207.6 152 74.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 8.8e-52 207.2 153 71.9
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.2e-51 206.8 149 74.5
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-51 206.1 153 72.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 3.4e-51 205.3 152 72.4
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-51 204.9 153 72.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.4e-51 204.9 145 75.2
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 5.7e-51 204.5 153 72.5
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-50 203.4 145 73.1
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-50 203.4 154 72.1
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.3e-50 203.4 152 71.7
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-50 203.0 152 71.7
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.2e-50 202.6 151 71.5
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.8e-50 202.2 146 72.6
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.8e-50 202.2 152 72.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.8e-50 202.2 148 72.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.7e-50 201.8 155 71.6
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.8e-50 201.4 155 70.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.8e-50 201.4 155 70.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.3e-50 201.1 146 73.3
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.3e-50 201.1 146 73.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 6.3e-50 201.1 152 71.1
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 6.3e-50 201.1 152 71.7
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 8.3e-50 200.7 149 71.1
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 8.3e-50 200.7 152 70.4
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 8.3e-50 200.7 152 71.7
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.1e-49 200.3 125 80.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.1e-49 200.3 149 71.1
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.4e-49 199.9 152 69.7
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.4e-49 199.9 126 78.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.8e-49 199.5 152 69.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.8e-49 199.5 152 72.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 2.4e-49 199.1 154 70.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.4e-49 199.1 153 68.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 3.1e-49 198.7 145 73.8
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.1e-49 198.4 152 69.1
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.1e-49 198.4 145 73.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 4.1e-49 198.4 152 69.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.4e-49 198.0 152 69.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 5.4e-49 198.0 151 70.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.4e-49 198.0 152 72.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 7.0e-49 197.6 146 71.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 7.0e-49 197.6 149 72.5
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 9.1e-49 197.2 156 69.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 9.1e-49 197.2 124 78.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 9.1e-49 197.2 145 69.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 9.1e-49 197.2 153 68.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 9.1e-49 197.2 152 71.7
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.2e-48 196.8 149 70.5
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.2e-48 196.8 152 71.1
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.6e-48 196.4 124 79.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.6e-48 196.4 152 68.4
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-48 196.4 145 72.4
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.6e-48 196.4 127 76.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.6e-48 196.4 146 71.9
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-48 195.7 124 77.4
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.7e-48 195.7 152 69.1
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.5e-48 195.3 152 70.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 3.5e-48 195.3 152 69.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 3.5e-48 195.3 152 69.1
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.5e-48 195.3 150 70.0
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.5e-48 195.3 152 69.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.5e-48 195.3 152 69.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 3.5e-48 195.3 145 72.4
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 3.5e-48 195.3 151 68.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.5e-48 194.9 149 70.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 5.9e-48 194.5 148 69.6
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 5.9e-48 194.5 152 69.7
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 7.7e-48 194.1 106 93.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 7.7e-48 194.1 125 76.8
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.0e-47 193.7 152 69.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.0e-47 193.7 152 67.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.0e-47 193.7 127 77.2
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.0e-47 193.7 156 68.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.3e-47 193.4 152 69.7
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.3e-47 193.4 149 69.8
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.3e-47 193.4 152 69.7
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.7e-47 193.0 146 70.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.7e-47 193.0 126 75.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.7e-47 193.0 152 67.8
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.7e-47 193.0 152 69.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.7e-47 193.0 127 75.6
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.7e-47 193.0 152 69.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.2e-47 192.6 126 77.0
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.9e-47 192.2 145 71.0
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.9e-47 192.2 125 76.8
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.9e-47 192.2 148 70.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 3.8e-47 191.8 153 66.0
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.0e-47 191.4 149 70.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 6.5e-47 191.0 152 67.8
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.5e-47 191.0 152 67.8
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.5e-47 191.0 152 67.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 8.5e-47 190.7 124 75.8
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 8.5e-47 190.7 151 67.5
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.1e-46 190.3 127 75.6
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.1e-46 190.3 145 66.9
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.5e-46 189.9 136 73.5
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 5.5e-46 188.0 152 66.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 5.5e-46 188.0 151 67.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 7.2e-46 187.6 125 74.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-45 186.8 124 75.0
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.6e-45 186.4 125 75.2
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.6e-45 186.4 146 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.7e-45 185.7 144 67.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.7e-45 185.7 152 67.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.1e-45 184.5 165 61.2
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.0e-44 181.8 184 58.7
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.5e-43 179.9 152 64.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.5e-43 177.6 151 64.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.2e-42 176.0 145 66.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.2e-42 176.0 158 60.1
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.7e-42 175.3 135 71.9
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.8e-41 172.9 176 55.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.8e-41 172.9 147 66.0
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 7.0e-41 171.0 124 66.9
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.9e-40 167.9 133 68.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.7e-39 166.4 155 58.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.9e-38 162.9 123 68.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.5e-38 162.5 150 61.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.6e-38 161.4 123 67.5
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 9.5e-38 160.6 123 67.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.6e-37 159.8 149 61.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.0e-36 157.1 126 62.7
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.4e-36 156.8 149 59.1
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.8e-36 156.4 124 61.3
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.5e-35 153.3 115 70.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.7e-34 149.8 125 58.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 8.3e-34 147.5 81 92.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.1e-33 147.1 121 65.3
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.8e-33 146.4 81 91.4
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 3.5e-32 142.1 105 72.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.5e-32 142.1 114 65.8
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 5.9e-32 141.4 114 67.5
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 5.0e-31 138.3 114 64.9
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.7e-29 131.7 112 59.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-28 129.8 83 75.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.2e-27 127.1 131 51.1
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.5e-27 126.7 108 64.8
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.4e-27 125.2 119 52.9
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.1e-22 110.5 107 60.7
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-20 102.8 69 73.9
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.6e-19 99.4 68 73.5
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 9.8e-19 97.4 68 72.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.4e-17 91.7 68 66.2
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-16 89.4 85 61.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 7.8e-16 87.8 125 37.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-15 85.9 80 60.0
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.9e-15 85.5 55 72.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.6e-15 84.7 52 75.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 8.6e-15 84.3 52 76.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.9e-14 83.2 52 75.0
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.1e-13 79.7 39 97.4
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 6.2e-13 78.2 47 78.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.9e-12 74.3 37 94.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 7.6e-11 71.2 37 91.9
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.3e-10 70.5 37 89.2
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.1e-09 67.4 67 59.7


User provided reference genes

Program Settings