Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 6.1e-119 431.0 249 100.0
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 2.7e-90 335.9 274 75.5
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 2.7e-90 335.9 274 75.5
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.7e-90 335.9 274 75.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 3.5e-90 335.5 274 75.5
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-90 335.5 274 75.5
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.0e-89 334.0 274 75.2
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 4.7e-87 325.1 274 73.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.4e-83 312.8 274 71.9
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.1e-78 297.4 274 69.0
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.1e-78 297.4 274 69.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.1e-78 297.4 274 69.0
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.6e-77 292.7 275 69.1
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 5.8e-77 291.6 274 70.1
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 8.4e-76 287.7 274 69.7
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 9.2e-75 284.3 276 66.3
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-74 282.3 266 71.1
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 6.0e-74 281.6 274 67.2
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.0e-73 280.8 278 67.6
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.7e-73 280.0 276 66.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.9e-73 278.9 274 67.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.9e-72 276.6 209 81.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 7.3e-72 274.6 275 67.3
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.1e-71 273.1 276 67.8
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 6.2e-71 271.6 274 65.0
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 8.1e-71 271.2 275 59.6
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.4e-70 270.4 275 65.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-70 270.0 276 63.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.8e-70 270.0 276 64.5
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.1e-70 269.2 275 65.1
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 5.2e-70 268.5 275 66.2
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 2.0e-69 266.5 276 65.2
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.4e-69 265.4 276 63.8
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.7e-68 263.5 275 64.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 4.9e-68 261.9 276 63.8
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.9e-68 261.9 276 62.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 6.4e-68 261.5 276 62.3
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 2.4e-67 259.6 220 68.6
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 2.4e-67 259.6 276 63.8
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.4e-67 259.6 276 63.0
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 3.2e-67 259.2 275 61.8
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 5.4e-67 258.5 276 62.0
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.2e-66 257.3 275 64.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 1.2e-66 257.3 276 63.8
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.1e-66 256.5 276 63.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 2.1e-66 256.5 274 63.9
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.1e-66 256.5 276 64.1
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.7e-66 256.1 275 61.1
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 4.6e-66 255.4 274 61.7
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 6.0e-66 255.0 277 62.5
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 7.8e-66 254.6 275 59.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.1e-65 251.9 276 62.7
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 8.7e-65 251.1 276 63.0
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 8.7e-65 251.1 275 60.0
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.1e-64 250.8 274 61.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.1e-64 250.8 276 63.0
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.9e-64 250.0 275 61.8
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.9e-64 250.0 274 60.2
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 3.3e-64 249.2 276 62.7
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 7.3e-64 248.1 274 60.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 9.6e-64 247.7 275 58.9
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.3e-63 247.3 280 60.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.8e-63 246.1 274 59.9
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 6.2e-63 245.0 276 63.8
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.4e-62 243.8 274 60.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.8e-62 243.4 314 56.7
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.4e-62 243.0 274 60.6
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.0e-62 242.3 274 60.6
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 9.0e-62 241.1 289 58.5
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 9.0e-62 241.1 276 61.2
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.2e-61 240.7 276 57.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.4e-61 239.2 275 60.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.7e-60 236.9 278 59.4
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.2e-60 236.5 278 59.0
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.9e-60 236.1 274 59.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.8e-60 235.7 269 61.0
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 3.8e-60 235.7 278 60.1
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.9e-59 233.4 274 55.8
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.4e-59 233.0 278 59.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 4.2e-59 232.3 276 59.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.2e-58 230.7 274 57.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.5e-58 229.2 275 58.2
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.3e-57 227.3 275 57.5
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-57 227.3 275 57.5
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-57 227.3 275 57.5
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 3.0e-57 226.1 274 57.3
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.0e-57 226.1 275 57.5
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 8.7e-57 224.6 274 56.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.1e-56 224.2 276 59.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.5e-56 223.0 276 59.1
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 4.3e-56 222.2 276 58.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 4.3e-56 222.2 276 58.0
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 4.3e-56 222.2 276 58.0
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.8e-55 219.5 276 55.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 4.8e-55 218.8 209 71.8
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.8e-54 216.9 276 57.2
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.0e-54 215.7 276 57.6
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 4.0e-54 215.7 275 56.7
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.5e-53 212.2 276 57.2
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 9.9e-53 211.1 274 54.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 7.1e-51 204.9 278 55.8
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.4e-46 190.7 274 52.2
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.1e-43 181.0 271 52.8
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 2.1e-42 176.8 266 47.4
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.6e-42 175.6 187 66.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 2.3e-41 173.3 278 51.1
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 8.7e-41 171.4 155 72.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 5.7e-40 168.7 278 50.4
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 9.0e-38 161.4 212 50.9
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 6.5e-36 155.2 208 52.9
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 1.6e-34 150.6 276 46.0
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 5.1e-33 145.6 243 52.7
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.8e-23 112.5 265 40.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 8.2e-23 111.7 114 59.6
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.7e-20 104.0 106 59.4
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.5e-20 102.1 97 61.9
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 1.9e-19 100.5 73 82.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 3.2e-19 99.8 62 77.4
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 8.8e-17 91.7 141 51.8
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 2.6e-16 90.1 146 42.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.0e-12 78.2 203 45.3
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.7e-12 77.4 247 38.1
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 8.5e-12 75.1 44 79.5
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 3.6e-10 69.7 182 40.7
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.7e-07 60.8 87 48.3
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 3.7e-07 59.7 72 70.8
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 9.1e-06 55.1 86 40.7


User provided reference genes

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