Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1219.5 610 100.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1187.6 610 98.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1175.6 610 97.2
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1175.6 610 97.2
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1174.8 614 96.4
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1164.8 612 96.6
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1163.7 617 95.3
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1163.3 613 95.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1163.3 613 95.9
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1158.7 613 95.8
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1158.7 613 95.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1152.9 610 95.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1147.5 627 93.5
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1142.1 612 93.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1137.1 612 93.5
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1134.0 611 93.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1111.3 611 92.0
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1110.5 618 90.3
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.3e-311 1070.1 616 87.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.8e-310 1068.5 611 87.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.2e-296 1022.7 614 83.6
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 611 82.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 612 82.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 610 82.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 5.2e-289 997.3 612 81.4
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 2.6e-288 995.0 612 81.4
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.4e-288 994.6 611 81.2
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.8e-288 993.8 611 81.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.2e-287 991.9 611 81.0
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.8e-287 991.1 615 80.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.4e-287 989.9 623 80.4
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.9e-286 988.8 622 80.7
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.9e-286 988.8 615 81.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.2e-286 988.0 600 82.3
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.2e-286 986.5 616 81.5
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.2e-285 986.1 616 78.7
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.2e-285 986.1 614 79.8
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.6e-285 985.7 617 80.6
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.1e-285 985.3 614 80.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 616 80.2
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.7e-285 984.9 615 80.3
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.7e-285 984.9 618 80.6
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.0e-285 983.8 616 78.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 7.8e-285 983.4 598 82.3
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.3e-284 981.9 601 80.9
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.0e-284 981.5 599 81.3
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 3.9e-284 981.1 561 85.2
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 3.9e-284 981.1 609 81.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 5.1e-284 980.7 609 80.5
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 6.6e-284 980.3 623 79.0
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.9e-283 978.8 622 79.6
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.9e-283 978.8 608 80.9
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.5e-283 978.4 614 79.8
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.3e-283 977.6 622 79.3
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 4.3e-283 977.6 614 79.6
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 5.6e-283 977.2 626 78.6
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.3e-283 976.9 572 83.4
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 9.6e-283 976.5 611 80.0
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.2e-282 976.1 615 79.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.6e-282 975.7 617 79.3
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.1e-282 975.3 610 79.3
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.8e-282 974.9 617 79.7
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.8e-282 974.9 614 80.0
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 6.2e-282 973.8 610 79.8
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 8.1e-282 973.4 611 79.9
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 8.1e-282 973.4 621 79.7
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 1.4e-281 972.6 610 79.5
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.0e-281 971.1 621 78.6
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.9e-281 970.3 610 78.7
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 5.8e-280 967.2 568 83.8
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 7.6e-280 966.8 610 78.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 9.9e-280 966.5 604 80.6
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.9e-280 966.5 610 78.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.9e-280 966.5 610 78.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 9.9e-280 966.5 585 81.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 9.9e-280 966.5 585 81.9
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.3e-279 966.1 612 79.4
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.7e-279 965.7 610 78.2
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.7e-279 965.7 613 79.1
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.9e-279 964.9 632 77.5
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 4.9e-279 964.1 558 83.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.9e-279 964.1 558 83.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.1e-278 963.0 651 76.8
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.1e-278 963.0 621 78.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.9e-278 962.2 612 79.7
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 3.2e-278 961.4 629 77.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.2e-278 961.1 558 84.4
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.7e-277 958.4 590 79.8
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.5e-277 958.0 614 77.5
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 7.8e-277 956.8 587 80.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.3e-276 956.1 612 77.9
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.0e-276 954.9 618 77.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.9e-276 954.5 606 79.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 6.6e-276 953.7 610 77.5
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.3e-275 951.0 613 77.2
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 6.9e-273 943.7 599 78.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.0e-272 942.2 597 78.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.4e-272 941.4 558 82.4
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 7.6e-272 940.3 558 82.3
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.9e-271 938.3 604 77.6
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 8.4e-271 936.8 600 78.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.2e-270 934.9 645 74.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 5.4e-270 934.1 658 73.3
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.6e-269 932.6 623 77.0
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.9e-267 925.6 615 76.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.5e-267 925.2 569 80.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 2.4e-265 918.7 525 84.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.1e-265 918.3 597 75.5
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.0e-264 915.6 559 82.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.6e-264 913.7 574 77.9
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.6e-264 913.7 689 69.2
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.5e-262 908.7 583 77.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 7.9e-261 903.7 592 74.7
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.0e-260 903.3 592 75.5
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.8e-258 895.2 577 76.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.2e-253 879.8 561 79.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.4e-251 870.5 558 76.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.1e-249 866.7 537 79.7
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.4e-249 865.5 627 72.1
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.4e-246 853.6 525 79.2
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 6.1e-245 850.9 633 70.3
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.1e-241 838.2 615 70.6
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.0e-236 823.5 624 68.8
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.5e-235 819.7 582 69.1
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 3.9e-228 795.0 557 68.9
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.9e-222 776.2 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 6.8e-220 767.7 490 77.3
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.6e-216 756.5 481 80.0
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 4.5e-216 755.0 490 76.9
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 5.5e-214 748.0 545 67.2
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.7e-208 729.2 426 83.1
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.2e-206 721.8 433 81.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-205 720.3 490 75.1
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 5.7e-203 711.4 433 79.4
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.1e-201 705.3 561 61.9
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-198 696.0 429 79.5
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.0e-183 646.0 403 79.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.6e-173 613.6 433 73.0
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.8e-170 602.4 577 53.7
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.0e-156 554.7 313 87.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.2e-144 517.7 386 71.2
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.6e-123 446.8 340 69.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.3e-114 417.9 286 74.5
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.0e-103 381.7 277 67.1
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.8e-87 327.8 215 74.4
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 6.0e-75 286.2 206 72.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.3e-74 284.3 557 33.9
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.8e-71 274.6 152 87.5
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.3e-65 253.8 150 80.7
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 2.3e-58 231.1 131 83.2
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 6.8e-55 219.5 126 85.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.2e-54 218.8 133 73.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 4.9e-53 213.4 116 93.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 6.6e-50 203.0 178 61.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 8.7e-50 202.6 144 72.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.6e-48 198.4 115 81.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 4.8e-48 196.8 114 78.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.0e-47 192.6 141 69.5
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-44 185.7 105 82.9
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.1e-42 176.8 115 72.2
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 3.6e-40 170.6 250 45.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.0e-38 164.9 146 62.3
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.4e-36 157.9 217 46.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.5e-33 147.9 143 61.5
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.6e-27 127.1 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.7e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 4.5e-22 110.5 70 71.4
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.5e-20 104.8 56 89.3
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-17 94.7 71 70.4
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.3e-16 92.4 212 33.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.8e-16 90.5 183 32.2
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.5e-12 78.2 67 52.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.6e-11 74.3 88 51.1


User provided reference genes

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