Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 0.0e+00 1133.2 630 100.0
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 0.0e+00 1091.6 630 97.3
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 6.8e-308 1060.1 632 91.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-298 1029.2 631 89.7
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.5e-294 1015.0 648 87.8
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 2.1e-288 995.3 650 86.5
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 2.1e-288 995.3 650 86.5
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 7.6e-283 976.9 654 86.4
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 5.1e-271 937.6 651 80.3
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.2e-267 926.4 651 80.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 9.9e-267 923.3 653 80.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.3e-266 922.9 651 80.0
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.8e-266 921.4 654 80.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.0e-263 913.3 651 79.6
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 8.2e-253 877.1 656 75.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 3.9e-239 831.6 657 71.8
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.8e-210 735.3 671 63.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 6.3e-205 718.0 667 64.3
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.2e-203 713.8 670 64.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.5e-203 711.8 671 62.7
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 7.7e-203 711.1 663 65.0
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 9.5e-201 704.1 665 64.7
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.2e-200 703.7 668 64.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.7e-200 701.8 674 61.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 6.1e-200 701.4 660 62.7
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 8.0e-200 701.0 666 61.4
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.4e-198 695.7 668 65.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 3.4e-198 695.7 669 64.0
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.7e-197 693.3 671 62.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 2.9e-197 692.6 668 63.0
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.9e-197 692.6 665 64.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 4.9e-197 691.8 669 63.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.4e-196 690.3 669 63.8
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 3.2e-196 689.1 671 63.3
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.6e-195 686.8 669 63.5
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.7e-195 686.0 664 60.8
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 3.5e-195 685.6 669 61.6
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 6.6e-194 681.4 668 61.5
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 8.0e-192 674.5 667 60.3
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 8.0e-192 674.5 666 61.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.8e-191 673.3 664 61.4
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-191 672.9 664 61.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.1e-191 672.5 664 63.3
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.1e-191 672.5 664 63.3
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.8e-191 671.4 664 61.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-190 670.2 660 63.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.7e-189 666.8 676 58.9
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.9e-189 666.0 678 60.9
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 8.3e-189 664.5 664 61.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-188 663.7 664 60.8
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 3.2e-188 662.5 669 59.6
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.1e-188 662.1 642 63.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 5.4e-188 661.8 667 59.2
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.2e-187 660.6 670 60.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.5e-187 659.1 666 59.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 3.9e-186 655.6 670 58.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.5e-185 653.7 664 59.5
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 1.2e-184 650.6 651 59.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.6e-184 650.2 663 59.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.7e-184 648.7 404 88.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 4.7e-184 648.7 669 60.8
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.1e-183 647.5 659 60.2
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.9e-183 644.4 662 59.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.2e-182 644.0 667 61.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.6e-182 642.9 663 59.0
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 7.5e-182 641.3 676 60.1
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 7.5e-182 641.3 660 60.0
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 4.1e-180 635.6 652 58.6
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.2e-179 634.0 657 60.7
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 4.6e-179 632.1 659 59.9
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 6.6e-178 628.2 662 59.4
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.5e-177 626.3 653 59.4
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.3e-177 625.9 653 59.3
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.3e-177 625.5 672 58.0
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 9.5e-177 624.4 659 59.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.8e-176 622.9 665 58.0
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.8e-175 620.2 659 58.3
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.8e-175 620.2 672 57.9
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.1e-175 619.4 673 57.1
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 4.0e-175 619.0 675 56.6
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 6.8e-175 618.2 667 56.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.0e-174 616.7 650 58.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 8.4e-173 611.3 660 55.8
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 8.4e-173 611.3 641 57.4
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.4e-172 610.5 659 55.8
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.5e-171 605.9 659 55.5
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-170 603.6 548 63.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.7e-170 603.6 548 63.5
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.3e-170 603.2 645 56.4
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.9e-170 602.4 658 55.0
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 3.9e-170 602.4 622 58.5
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.6e-170 601.3 661 56.1
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.6e-170 601.3 663 55.5
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 4.3e-169 599.0 657 54.9
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.1e-168 596.7 658 57.1
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 6.2e-168 595.1 660 55.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 6.2e-168 595.1 659 57.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 8.1e-168 594.7 664 54.7
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 3.1e-167 592.8 536 62.5
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.0e-167 592.4 662 58.3
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 6.8e-167 591.7 665 55.2
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.6e-166 589.7 641 61.9
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.4e-166 589.0 666 56.6
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.2e-165 586.6 667 53.2
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 2.9e-165 586.3 665 58.0
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 2.9e-165 586.3 656 55.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.9e-165 586.3 656 54.4
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.4e-164 583.9 660 53.3
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.7e-163 579.7 666 56.3
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 7.8e-163 578.2 654 56.1
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-162 577.8 640 57.0
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.0e-162 577.8 667 52.8
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-162 577.0 611 58.9
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.1e-161 574.3 669 51.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.6e-161 571.2 666 53.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.1e-159 566.2 668 52.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 4.0e-159 565.8 665 52.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 2.0e-158 563.5 644 52.8
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.4e-158 562.8 648 54.2
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 5.8e-158 562.0 664 52.9
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.9e-157 558.9 655 53.7
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.9e-156 557.0 648 52.6
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 2.4e-156 556.6 656 51.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-156 556.6 663 52.3
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 7.1e-156 555.1 659 54.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.1e-155 553.5 662 52.4
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.6e-153 544.7 667 51.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.1e-152 543.5 569 57.1
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.4e-151 540.0 534 58.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.0e-151 539.3 649 54.2
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.6e-150 535.0 687 48.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.2e-149 533.5 656 50.3
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.5e-148 528.9 544 56.6
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 3.5e-147 526.2 657 53.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 4.6e-147 525.8 667 49.0
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 6.0e-147 525.4 670 48.5
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 6.7e-146 521.9 672 49.1
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-145 520.4 662 49.7
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 5.3e-143 512.3 651 48.2
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.2e-141 506.9 659 50.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 4.2e-140 502.7 661 48.4
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.3e-136 491.1 496 56.5
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 2.1e-136 490.3 662 46.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.1e-136 490.3 661 47.5
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 8.2e-136 488.4 530 61.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 5.0e-133 479.2 531 54.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.1e-132 478.0 658 48.0
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.2e-131 474.6 658 47.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.3e-130 471.1 608 49.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.7e-120 437.6 605 47.8
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.4e-118 429.9 629 47.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 7.2e-116 422.2 646 44.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.6e-110 404.4 595 46.4
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 1.6e-107 394.4 404 63.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 1.9e-100 370.9 405 58.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.8e-98 364.4 410 56.1
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 8.6e-85 318.9 309 59.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.6e-84 316.2 652 38.8
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.8e-83 313.9 554 41.2
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.0e-69 267.3 430 43.0
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 6.8e-66 256.1 228 62.7
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.8e-59 234.2 639 34.6
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 6.2e-59 233.0 628 33.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 7.8e-46 189.5 268 42.5
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 2.4e-34 151.4 112 65.2
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-24 119.0 135 49.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 6.5e-24 116.7 77 71.4
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.2e-23 114.0 106 50.9
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.3e-21 109.0 240 40.0
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.7e-19 100.9 135 39.3
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 6.3e-19 100.1 79 59.5
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-15 89.0 58 67.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.2e-14 85.9 78 60.3
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.1e-14 83.6 79 51.9
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 4.3e-12 77.4 60 63.3
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.3e-12 77.4 595 23.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 2.4e-10 71.6 310 25.8
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 4.2e-07 60.8 471 23.6
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.6e-06 57.8 129 37.2


User provided reference genes

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