Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1372.5 675 100.0
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1369.8 675 99.9
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1349.7 676 98.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1347.0 676 97.9
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1345.9 676 98.1
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1331.6 675 96.9
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1293.5 675 93.6
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1281.9 677 93.8
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1279.6 679 92.8
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1266.9 677 91.9
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1259.2 677 90.7
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1214.9 675 88.9
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1177.9 677 84.3
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1137.9 672 81.8
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 1.3e-288 996.1 679 72.9
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 2.7e-286 988.4 682 72.1
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 4.6e-286 987.6 680 73.5
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 6.0e-286 987.3 682 72.7
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 7.3e-284 980.3 621 76.0
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 5.8e-281 970.7 610 76.1
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 4.9e-280 967.6 640 73.1
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 7.1e-279 963.8 628 73.9
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 2.1e-278 962.2 679 71.3
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 2.1e-278 962.2 666 71.2
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 3.5e-278 961.4 678 70.5
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 3.9e-277 958.0 685 70.8
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 3.3e-276 954.9 683 70.7
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 4.3e-276 954.5 676 70.3
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 2.4e-274 948.7 680 71.0
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 4.9e-272 941.0 681 69.2
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 3.5e-270 934.9 668 69.3
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 5.1e-269 931.0 685 68.6
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 6.7e-269 930.6 686 69.1
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 2.5e-268 928.7 629 73.0
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 6.2e-267 924.1 626 72.4
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 8.1e-267 923.7 677 69.3
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 8.1e-267 923.7 680 69.1
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 1.8e-266 922.5 670 67.3
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 6.9e-266 920.6 670 67.9
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 9.0e-266 920.2 675 68.0
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 2.0e-265 919.1 614 72.8
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 3.4e-265 918.3 680 68.8
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 3.4e-265 918.3 662 68.6
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 5.8e-265 917.5 674 68.8
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.0e-264 916.8 619 72.4
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 2.2e-264 915.6 683 68.5
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 2.2e-264 915.6 676 70.3
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 2.9e-264 915.2 629 71.1
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.8e-264 914.8 670 67.6
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 2.5e-263 912.1 665 68.4
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 3.2e-263 911.8 681 66.5
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 5.5e-263 911.0 632 69.5
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 5.5e-263 911.0 614 71.8
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 5.5e-263 911.0 675 67.3
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 7.1e-263 910.6 626 70.8
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 2.7e-262 908.7 671 68.4
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 8.7e-261 903.7 629 69.6
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 1.1e-260 903.3 608 71.4
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 1.9e-260 902.5 608 70.9
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 3.3e-260 901.7 680 68.4
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 9.6e-260 900.2 679 67.6
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 1.3e-259 899.8 629 70.4
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.3e-259 897.5 648 70.5
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.8e-258 896.0 653 69.1
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 2.0e-257 892.5 653 68.9
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 5.9e-257 891.0 629 71.5
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 2.2e-256 889.0 629 71.7
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 2.9e-256 888.6 629 71.7
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 6.5e-256 887.5 607 70.7
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.6e-254 882.9 689 64.4
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 6.1e-254 880.9 619 69.5
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.8e-253 879.4 673 67.3
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 1.8e-253 879.4 683 65.7
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 3.9e-253 878.2 645 67.8
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 1.9e-252 875.9 636 67.1
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 9.7e-252 873.6 586 71.5
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 6.3e-251 870.9 668 66.5
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 4.5e-249 864.8 685 65.5
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 1.9e-247 859.4 666 64.4
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 2.2e-243 845.9 625 66.1
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 7.7e-241 837.4 629 66.6
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 2.0e-233 812.8 633 65.4
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 1.1e-228 797.0 657 63.3
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 6.3e-227 791.2 554 71.5
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.1e-226 790.4 585 64.8
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 2.4e-226 789.3 554 72.0
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 5.3e-226 788.1 796 54.1
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.0e-224 783.9 647 61.7
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 4.7e-222 775.0 555 70.5
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.0e-221 773.9 554 68.6
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.0e-220 769.6 775 55.1
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 2.6e-212 742.7 656 60.2
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.8e-210 736.5 597 64.5
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 7.5e-196 688.0 574 59.1
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 1.3e-192 677.2 466 70.6
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 2.5e-183 646.4 786 48.7
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 8.4e-163 578.2 431 65.7
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 7.4e-143 511.9 447 57.3
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 3.1e-133 479.9 370 65.1
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 2.2e-123 447.2 532 46.8
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 5.5e-114 416.0 610 42.1
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 5.5e-106 389.4 284 68.7
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.4e-104 384.8 344 58.1
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 6.1e-97 359.4 294 62.6
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.8e-96 355.9 326 58.3
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.8e-96 355.9 326 58.3
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 1.6e-84 318.2 561 36.9
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 8.3e-78 295.8 241 60.2
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 3.6e-73 280.4 235 62.1
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 7.8e-60 236.1 567 30.3
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.2e-52 212.2 256 46.1
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 7.8e-52 209.5 245 52.2
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 6.9e-40 169.9 184 48.9
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 1.1e-32 146.0 142 52.8
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.4e-32 145.6 124 55.6
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.3e-30 139.0 139 53.2
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.8e-09 68.2 120 36.7


User provided reference genes

Program Settings