Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 5017.6 2556 100.0
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 4993.3 2591 98.6
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 4592.3 2557 92.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 4540.7 2606 90.1
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 3932.5 2662 78.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3504.1 2581 72.9
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3415.6 2628 70.7
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3357.8 2428 74.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 3259.9 2440 73.3
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 3211.8 2593 67.5
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3148.2 2566 68.4
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3034.6 2567 66.4
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 2977.2 2588 65.9
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 2952.9 2563 65.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2811.9 2216 69.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2712.9 2619 57.7
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2674.0 2213 67.4
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1984.1 2643 45.7
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1904.8 2653 44.1
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1852.0 2676 43.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1848.9 2671 42.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1817.7 2639 42.6
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1817.0 2649 42.6
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1808.5 2643 42.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1807.3 2660 42.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1792.7 2674 42.3
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1786.9 2665 41.9
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1776.9 2640 41.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1771.9 2646 42.2
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1759.2 2642 41.1
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1745.7 2701 41.9
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1745.3 2642 42.0
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1728.8 2664 41.9
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1705.3 2621 41.1
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1675.6 2731 39.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1654.0 2626 40.5
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1648.3 2602 40.0
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1645.2 2254 44.3
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1640.9 1212 72.6
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1625.1 2636 39.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1619.0 2553 40.9
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1616.7 2756 39.8
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1613.2 2626 40.0
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1606.3 2621 39.1
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1600.5 2696 39.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1589.3 2647 39.8
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1562.0 2673 38.2
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1555.4 2618 38.7
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1543.9 2665 37.9
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1540.4 2666 38.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1533.1 2638 39.8
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1530.4 2649 38.1
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1528.1 2602 38.8
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1511.9 2623 38.2
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1507.3 2649 37.4
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1501.5 2614 37.7
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1495.7 2636 37.7
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1493.8 2635 37.8
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1477.6 2635 38.3
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1472.6 2633 38.2
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1471.1 2632 37.5
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1470.7 2639 37.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1467.2 2624 37.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 2682 37.2
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1466.4 2637 37.9
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1455.3 2708 37.1
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1455.3 2620 38.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1449.1 2597 38.4
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1448.3 2415 39.3
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1434.9 2634 37.2
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1432.5 2697 36.4
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1431.8 2633 37.1
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1429.1 2625 37.9
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1423.7 2726 36.3
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1418.3 2645 37.3
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1414.8 2689 36.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1402.5 2662 37.2
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1401.0 2584 37.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1368.2 2555 38.2
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1357.8 2592 35.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1349.7 2728 35.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1334.3 2556 36.0
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1310.8 2787 34.1
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1293.1 1818 44.2
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1267.7 2126 39.3
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1251.1 2605 33.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1241.1 2629 34.3
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1224.9 2355 35.5
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1199.1 2677 33.6
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1167.1 2036 39.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1133.6 888 69.9
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1114.8 2047 36.1
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1104.7 2320 34.7
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1095.5 1790 39.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 2.5e-308 1063.5 2069 35.6
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.2e-305 1054.7 2349 33.2
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 2.3e-301 1040.4 2124 36.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 2.2e-256 891.0 1827 34.8
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.1e-230 803.1 725 63.2
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.2e-223 779.6 1738 34.1
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.5e-201 707.6 1066 43.8
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.1e-194 684.1 935 44.1
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-182 646.0 516 68.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 2.0e-180 638.6 2779 26.5
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 7.0e-178 630.2 779 48.0
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.1e-176 624.0 842 43.7
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 7.3e-167 593.6 348 89.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.5e-156 559.3 2590 26.1
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 1.9e-154 552.4 2806 24.9
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.3e-142 513.1 1178 32.9
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.1e-141 510.0 2905 25.1
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.4e-133 482.3 470 61.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.3e-133 481.1 560 52.1
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 9.0e-133 480.3 639 47.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.1e-122 446.8 701 40.7
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 4.2e-122 444.9 610 43.9
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 9.7e-119 433.7 352 67.0
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-118 433.3 951 33.3
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.4e-117 429.9 330 73.0
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.4e-109 402.5 573 43.1
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.0e-108 399.4 1146 30.7
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.0e-103 382.9 765 36.6
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.1e-98 367.1 540 39.6
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.6e-97 363.2 1134 29.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.9e-91 342.4 416 46.9
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.5e-82 313.5 643 36.2
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-75 290.4 512 38.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 5.8e-71 275.0 299 55.2
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.6e-59 235.0 425 37.2
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 1.6e-52 213.8 118 90.7
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.1e-45 191.0 418 32.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.7e-43 183.7 183 50.8
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 2.4e-40 173.3 375 32.5
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.6e-39 169.9 194 47.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.8e-33 149.8 187 50.3
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.4e-32 146.7 343 33.8
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 5.8e-31 142.1 213 39.0
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.6e-31 141.7 286 36.4
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.2e-30 140.2 244 40.6
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 2.9e-30 139.8 341 33.7
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 4.2e-29 136.0 146 50.7
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.3e-27 131.0 205 43.4
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.9e-26 127.1 139 45.3
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 8.1e-25 121.7 210 38.6
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 1.9e-21 110.5 122 46.7
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 9.3e-21 108.2 395 24.1
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 2.5e-18 100.1 209 36.4
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 2.0e-15 90.5 80 51.2
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.3e-14 87.8 177 33.9
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.7e-14 87.4 124 41.9
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.5e-13 83.6 96 43.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 5.5e-13 82.4 398 23.9
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 5.5e-13 82.4 398 23.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 9.3e-13 81.6 147 40.1
C03p92150 Brassica napus HOM05D001133 ORTHO05D000941 2.1e-12 80.5 44 88.6
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 7.9e-12 78.6 66 63.6
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.0e-11 76.6 140 34.3
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.5e-10 74.3 214 26.6
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.6e-09 70.9 73 46.6
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 4.8e-09 69.3 146 30.1
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 3.1e-08 66.6 69 50.7
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.2e-07 64.7 73 45.2
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.6e-07 63.5 225 28.0
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.7e-06 60.8 84 44.0


User provided reference genes

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