Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1175.2 680 100.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 0.0e+00 1155.6 680 97.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 0.0e+00 1116.7 680 92.9
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 0.0e+00 1115.1 680 92.6
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.7e-291 1004.6 678 86.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 8.1e-291 1003.4 678 85.7
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 6.0e-286 987.3 680 84.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.2e-283 976.9 680 83.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.9e-280 968.4 679 83.4
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 4.2e-279 964.5 680 83.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 9.7e-276 953.4 679 82.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 9.7e-276 953.4 680 83.1
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-275 952.6 678 83.9
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 6.7e-269 930.6 680 83.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-262 909.1 553 92.6
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-260 902.5 679 77.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.7e-254 882.1 684 78.2
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.4e-228 795.0 688 68.8
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 9.2e-218 760.8 691 70.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.5e-215 752.7 686 71.3
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.2e-195 686.4 708 61.7
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.1e-194 681.4 706 59.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.1e-183 647.5 702 63.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.2e-174 614.8 700 61.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-173 614.4 700 62.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.4e-173 613.2 700 53.1
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.0e-173 611.3 700 61.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.5e-172 609.0 702 60.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.2e-170 602.4 707 57.6
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-169 600.5 702 60.0
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.7e-169 599.7 701 60.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.3e-168 597.4 698 56.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 6.7e-168 595.1 706 59.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.9e-167 593.6 700 57.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 9.7e-167 591.3 702 60.1
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.2e-166 590.1 702 57.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.0e-163 581.3 698 56.7
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.6e-161 573.9 699 57.7
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.4e-160 570.9 697 56.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 9.1e-157 558.1 694 54.2
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.5e-154 550.1 700 56.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-153 546.6 708 54.8
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.7e-153 546.6 704 56.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 7.9e-153 545.0 709 48.9
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-151 540.4 710 53.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 7.4e-151 538.5 708 54.8
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 7.4e-151 538.5 708 55.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.4e-151 538.5 710 55.8
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.7e-150 536.2 725 52.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-149 534.6 704 56.4
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 3.1e-149 533.1 703 55.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 9.1e-149 531.6 702 52.0
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.4e-148 529.6 710 53.8
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 4.5e-148 529.3 709 54.3
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.9e-148 528.9 699 54.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.3e-147 527.7 699 55.5
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 5.0e-147 525.8 714 52.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 6.5e-147 525.4 703 53.9
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 8.5e-147 525.0 700 55.6
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-146 524.2 709 51.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.9e-146 523.9 759 47.3
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.9e-146 523.9 701 55.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.6e-145 520.8 718 50.8
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 8.0e-145 518.5 707 51.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 8.0e-145 518.5 700 52.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.8e-144 517.3 710 51.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.7e-143 511.5 700 53.9
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.8e-142 509.2 704 51.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 4.8e-142 509.2 701 53.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 8.2e-142 508.4 699 52.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.1e-141 506.5 707 51.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 4.1e-141 506.1 732 51.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 3.5e-140 503.1 703 48.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.3e-139 501.1 704 53.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.9e-139 500.0 670 55.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.9e-139 500.0 703 52.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 5.0e-139 499.2 743 48.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.2e-138 495.4 706 49.7
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.6e-137 494.2 695 52.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.0e-136 491.5 704 52.6
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.8e-136 490.7 704 53.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 5.2e-136 489.2 704 48.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.3e-135 486.5 701 50.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.4e-135 486.1 705 50.6
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 5.7e-135 485.7 630 58.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 5.7e-135 485.7 710 53.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.1e-133 481.5 692 50.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.8e-133 480.7 768 40.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.8e-133 480.7 727 50.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.1e-133 479.9 702 53.1
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 7.0e-133 478.8 703 51.8
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 7.0e-133 478.8 694 53.3
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.0e-131 474.9 637 56.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.7e-131 474.2 707 53.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.2e-131 473.8 704 52.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.2e-130 469.5 633 55.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.0e-127 460.7 709 50.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.0e-127 460.7 695 53.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 3.3e-122 443.4 699 51.5
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.8e-120 437.6 702 44.7
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 5.2e-120 436.0 716 49.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.2e-119 434.9 694 42.4
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 9.2e-117 425.2 637 55.4
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.0e-116 424.1 704 40.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.9e-115 420.2 695 42.2
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.8e-112 409.1 701 44.8
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.3e-110 404.8 470 62.6
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 5.4e-109 399.4 698 39.5
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.6e-108 397.9 699 39.9
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.0e-107 392.9 533 43.5
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.2e-101 373.6 689 40.3
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.9e-98 364.4 519 52.8
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.6e-97 361.3 624 50.3
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-90 338.6 525 45.5
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.1e-89 334.3 527 50.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-88 330.9 515 51.5
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.1e-76 291.2 522 40.8
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 7.8e-76 289.3 460 44.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.1e-74 285.4 709 42.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.5e-74 284.3 526 36.7
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-68 264.2 414 51.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-65 255.0 269 65.8
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.2e-61 240.7 253 73.1
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.9e-59 233.8 316 52.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 4.5e-55 220.3 341 42.5
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.2e-54 218.0 423 35.0
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-51 208.8 124 82.3
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 9.7e-50 202.6 122 81.1
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-49 202.2 474 33.1
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-48 197.6 468 34.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-47 195.7 252 53.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 4.2e-45 187.2 131 71.8
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 5.1e-43 180.3 702 30.3
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.8e-41 174.5 197 52.3
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.3e-38 165.6 272 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.2e-38 164.9 559 28.1
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 4.2e-37 160.6 134 64.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-32 146.0 115 67.0
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-32 145.6 121 61.2
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.2e-31 142.5 501 30.9
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.7e-31 139.8 122 56.6
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.1e-28 131.7 169 53.3
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.6e-26 124.8 234 45.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 3.3e-26 124.4 109 56.9
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 4.1e-24 117.5 122 47.5
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.6e-23 114.8 160 51.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 3.5e-23 114.4 142 59.9
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-22 112.8 98 63.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-19 102.1 94 60.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.2e-18 99.4 70 70.0
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 9.1e-16 89.7 126 45.2
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 6.5e-14 83.6 245 30.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.1e-13 82.8 284 28.5
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.4e-13 79.7 97 41.2
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-12 79.3 100 42.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-12 79.3 100 42.0
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.7e-12 78.2 97 41.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 4.7e-12 77.4 152 38.2
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-11 75.5 100 39.0
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 2.3e-11 75.1 124 35.5
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-10 71.2 100 37.0
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-10 71.2 75 49.3
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.4e-10 71.2 256 25.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-08 65.9 100 37.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-08 65.5 51 54.9
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-08 65.1 100 35.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-08 65.1 100 37.0
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-08 64.7 43 74.4
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-08 64.7 43 74.4
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-08 64.7 43 74.4
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 9.1e-08 63.2 72 44.4
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-07 62.8 43 72.1
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-07 62.8 43 72.1
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 3.5e-07 61.2 29 93.1
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-07 61.2 43 69.8
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 3.5e-07 61.2 61 45.9
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.0e-06 59.7 60 55.0


User provided reference genes

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