Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 1.8e-65 253.1 192 100.0
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 1.8e-65 253.1 192 100.0
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 1.0e-57 227.3 195 79.5
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 1.0e-57 227.3 195 79.5
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 2.6e-53 212.6 191 89.0
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 3.3e-48 195.7 192 88.0
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 6.3e-47 191.4 192 84.9
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 6.5e-44 181.4 191 84.8
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 6.1e-42 174.9 193 68.9
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 6.1e-42 174.9 198 82.8
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 1.0e-41 174.1 207 51.7
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 6.7e-41 171.4 194 69.6
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 9.7e-40 167.5 192 81.8
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 3.7e-39 165.6 193 83.9
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.0e-37 159.8 198 77.8
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 3.5e-37 159.1 193 81.9
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 5.9e-37 158.3 192 73.4
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 5.9e-37 158.3 191 80.1
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 4.2e-35 152.1 161 75.2
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 5.5e-35 151.8 198 77.3
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 8.0e-34 147.9 192 78.6
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-30 137.5 193 49.7
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 1.2e-29 134.0 188 59.0
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 4.5e-29 132.1 192 72.9
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 4.5e-29 132.1 192 71.4
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 2.9e-28 129.4 192 70.3
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 6.5e-28 128.3 192 72.9
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 1.1e-27 127.5 192 71.9
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 1.5e-27 127.1 192 70.3
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 7.2e-27 124.8 192 69.8
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 2.7e-26 122.9 192 66.1
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 2.7e-26 122.9 192 70.3
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 4.7e-26 122.1 193 72.0
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 6.1e-26 121.7 192 70.8
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 3.0e-25 119.4 193 70.5
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 3.0e-25 119.4 193 70.5
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 3.0e-25 119.4 193 70.5
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 3.0e-25 119.4 192 70.8
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 4.0e-25 119.0 192 68.8
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 4.0e-25 119.0 192 68.2
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 4.0e-25 119.0 192 69.3
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 5.2e-25 118.6 193 71.5
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 6.8e-25 118.2 192 69.3
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.2e-24 117.5 192 68.2
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.2e-24 117.5 192 68.2
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 1.2e-24 117.5 192 68.8
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 1.5e-24 117.1 192 71.4
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 1.5e-24 117.1 192 71.4
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 4.4e-24 115.5 72 88.9
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 5.7e-24 115.2 192 70.3
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 5.7e-24 115.2 192 69.8
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 9.8e-24 114.4 192 65.6
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 9.8e-24 114.4 192 68.8
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 9.8e-24 114.4 192 68.2
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.3e-23 114.0 192 67.7
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 1.7e-23 113.6 192 69.3
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 2.2e-23 113.2 192 66.7
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 2.2e-23 113.2 192 68.8
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 2.2e-23 113.2 190 67.9
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.7e-23 112.5 192 68.8
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 4.8e-23 112.1 192 68.2
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 6.3e-23 111.7 189 53.4
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 8.3e-23 111.3 192 70.3
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 8.3e-23 111.3 191 67.5
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 1.1e-22 110.9 192 69.8
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.4e-22 110.5 192 68.2
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 1.8e-22 110.2 192 68.2
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 2.4e-22 109.8 192 66.7
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 3.1e-22 109.4 192 67.2
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.1e-22 109.4 191 70.2
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 4.1e-22 109.0 192 65.6
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 7.0e-22 108.2 192 68.2
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 7.0e-22 108.2 192 68.2
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 7.0e-22 108.2 192 65.6
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 7.0e-22 108.2 191 68.1
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 9.1e-22 107.8 189 53.4
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 2.0e-21 106.7 192 67.2
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 2.0e-21 106.7 193 65.8
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 2.0e-21 106.7 188 67.6
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 3.5e-21 105.9 192 66.7
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 3.5e-21 105.9 192 64.6
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 3.5e-21 105.9 192 65.1
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 3.5e-21 105.9 188 67.0
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 4.5e-21 105.5 192 66.7
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 1.3e-20 104.0 192 64.6
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.3e-20 104.0 200 64.0
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 1.7e-20 103.6 73 84.9
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 1.7e-20 103.6 193 65.3
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 2.3e-20 103.2 191 68.6
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 3.8e-20 102.4 188 66.0
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 5.0e-20 102.1 192 64.1
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 6.6e-20 101.7 192 66.7
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 6.6e-20 101.7 188 50.0
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 1.1e-19 100.9 192 65.6
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 1.5e-19 100.5 192 68.2
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 3.3e-19 99.4 192 62.5
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 4.2e-19 99.0 199 51.3
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 4.2e-19 99.0 192 65.1
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 5.5e-19 98.6 192 62.5
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 7.2e-19 98.2 195 64.1
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 7.2e-19 98.2 188 67.0
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 9.5e-19 97.8 189 51.9
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 1.2e-18 97.4 188 67.0
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 2.1e-18 96.7 189 49.7
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 2.8e-18 96.3 191 63.9
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 2.8e-18 96.3 192 65.1
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 4.7e-18 95.5 188 62.2
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 4.7e-18 95.5 203 60.6
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 6.1e-18 95.1 192 65.6
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 6.1e-18 95.1 188 67.0
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 8.0e-18 94.7 191 64.4
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 1.0e-17 94.4 186 51.1
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.4e-17 94.0 192 65.6
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 2.3e-17 93.2 188 67.6
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 3.0e-17 92.8 192 65.1
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 4.0e-17 92.4 192 63.5
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 5.2e-17 92.0 73 80.8
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 6.8e-17 91.7 189 51.9
MSTRG.14808 Avicennia marina HOM05D002138 ORTHO05D002106 1.2e-16 90.9 188 64.4
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 1.2e-16 90.9 186 62.9
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 1.5e-16 90.5 192 66.1
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 2.0e-16 90.1 179 66.5
Os12g0611000 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 4.4e-16 89.0 192 63.0
Lj6g0027782 Lotus japonicus HOM05D002138 ORTHO05D002106 8.3e-15 84.7 198 61.6
Oeu000495.1 Olea europaea HOM05D002138 ORTHO05D002106 4.1e-14 82.4 187 62.6
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 7.0e-14 81.6 202 61.4
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 1.2e-13 80.9 71 69.0
Oeu060328.1 Olea europaea HOM05D002138 ORTHO05D002106 1.6e-13 80.5 189 65.6
Gohir.A05G111400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.0e-13 80.1 198 62.1
HPP92_015683 Vanilla planifolia HOM05D002138 ORTHO05D002106 2.0e-13 80.1 192 62.0
Pp3c11_12260 Physcomitrium patens HOM05D002138 ORTHO05D002106 2.7e-13 79.7 193 59.1
Sc22g0001600 Simmondsia chinensis HOM05D002138 ORTHO05D002106 2.7e-13 79.7 183 59.0
Os03g0639600 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 4.5e-13 79.0 199 58.3
Sabra11G0144900 Salix brachista HOM05D002330 ORTHO05D002411 4.5e-13 79.0 201 60.7
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 1.0e-12 77.8 201 59.7
MSTRG.7564 Avicennia marina HOM05D002138 ORTHO05D002106 2.9e-12 76.3 194 59.8
Migut.M01935 Erythranthe guttata HOM05D002138 ORTHO05D002106 5.0e-12 75.5 196 54.6
Zm00001eb050760 Zea mays HOM05D002138 ORTHO05D002106 6.6e-12 75.1 194 58.2
CAN.G954.16 Capsicum annuum HOM05D002138 ORTHO05D002106 8.6e-12 74.7 190 62.6
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 1.9e-11 73.6 192 58.3
Pp3c7_12740 Physcomitrium patens HOM05D002138 ORTHO05D002106 3.3e-11 72.8 179 59.8
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 4.3e-11 72.4 176 46.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 4.3e-11 72.4 201 33.3
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 5.6e-11 72.0 246 40.7
SMO358G0140 Selaginella moellendorffii HOM05D002138 ORTHO05D002106 5.6e-11 72.0 193 51.8
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 5.6e-11 72.0 192 58.9
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 2.1e-10 70.1 72 58.3
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 3.6e-10 69.3 191 57.6
SGA_v2.0_scaffold298G47631 Striga asiatica HOM05D002138 ORTHO05D002106 4.7e-10 68.9 190 62.1
SGA_v2.0_scaffold51G18667 Striga asiatica HOM05D002138 ORTHO05D002106 6.1e-10 68.6 183 63.4
Zm00001eb135920 Zea mays HOM05D002138 ORTHO05D002106 1.8e-09 67.0 183 58.5
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 2.0e-08 63.5 63 60.3
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 2.6e-08 63.2 70 55.7
CAN.G79.49 Capsicum annuum HOM05D002138 ORTHO05D002106 6.4e-07 58.5 53 56.6
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 6.4e-07 58.5 65 60.0
FAN25G1398 Fragaria x ananassa HOM05D002138 ORTHO05D002106 8.3e-07 58.2 45 60.0
SalBow8G3701 Salvia bowleyana HOM05D002138 ORTHO05D002106 8.3e-07 58.2 267 43.8
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 1.1e-06 57.8 65 58.5
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.1e-06 57.8 32 71.9
Peaxi162Scf00267g00714 Petunia axillaris HOM05D002138 ORTHO05D002106 2.4e-06 56.6 53 56.6
AagrBONN_evm.TU.Sc2ySwM_362.175 Anthoceros agrestis HOM05D002138 ORTHO05D002106 3.2e-06 56.2 72 50.0
Hund11254 Selenicereus undatus HOM05D002138 ORTHO05D002106 3.2e-06 56.2 46 56.5
SEGI_34632 Sequoiadendron giganteum HOM05D002138 ORTHO05D002106 3.2e-06 56.2 41 63.4
ClCG10G001750 Citrullus lanatus HOM05D002138 ORTHO05D002106 5.4e-06 55.5 34 61.8
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 5.4e-06 55.5 178 31.5
SalBow6G3328 Salvia bowleyana HOM05D002138 ORTHO05D002106 5.4e-06 55.5 35 65.7
Sopen02g009420 Solanum pennellii HOM05D002138 ORTHO05D000004 5.4e-06 55.5 60 58.3
AUR62002695 Chenopodium quinoa HOM05D002138 ORTHO05D002106 7.0e-06 55.1 66 56.1
Duzib160G0212 Durio zibethinus HOM05D002138 ORTHO05D002106 7.0e-06 55.1 35 65.7


User provided reference genes

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