Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1456.0 723 100.0
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1429.1 723 97.8
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1404.0 723 96.7
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1401.3 723 96.5
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1391.3 723 96.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1329.3 723 91.0
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1312.0 723 90.5
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1293.5 723 89.2
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1276.9 724 88.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1271.9 723 87.7
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1271.5 723 88.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1197.6 736 80.8
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1165.2 726 79.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 721 68.1
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.0e-296 1021.1 721 68.2
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 721 68.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 4.2e-293 1011.1 711 68.5
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 708 68.5
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 6.0e-292 1007.3 708 69.2
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 7.8e-292 1006.9 713 68.2
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 1.9e-290 1002.3 723 67.8
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 1.3e-289 999.6 721 67.3
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.1e-288 996.5 724 67.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.1e-288 995.0 706 68.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.5e-287 992.6 726 66.8
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 2.0e-287 992.3 706 68.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.3e-286 989.6 708 68.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.1e-285 986.5 710 67.3
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.9e-285 985.7 721 66.9
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.6e-284 981.1 721 66.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 7.9e-284 980.3 721 66.4
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 3.0e-283 978.4 721 66.3
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.3e-282 974.9 725 66.6
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 5.6e-282 974.2 723 65.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 8.1e-281 970.3 706 67.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.4e-280 968.8 718 66.6
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 8.4e-278 960.3 732 64.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 8.4e-278 960.3 722 65.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.4e-277 959.5 724 64.6
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 7.1e-277 957.2 724 64.8
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.9e-274 949.1 710 64.6
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 5.6e-274 947.6 715 64.9
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.3e-273 946.4 727 64.5
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 3.7e-273 944.9 723 63.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.0e-271 939.1 707 64.4
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 4.5e-271 937.9 715 64.2
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 4.5e-271 937.9 726 64.9
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.0e-270 936.8 727 64.2
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.3e-270 936.4 722 64.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 3.8e-270 934.9 721 63.9
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.4e-269 932.9 728 63.2
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 7.1e-269 930.6 725 63.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.2e-268 929.9 707 63.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.6e-268 929.5 708 63.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-268 927.9 720 63.2
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 6.0e-268 927.5 708 63.3
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.0e-267 926.8 721 63.8
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.3e-266 921.8 727 63.0
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 3.3e-266 921.8 705 63.8
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 8.2e-265 917.1 724 62.7
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.4e-263 911.8 725 63.4
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 5.9e-263 911.0 650 67.5
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.8e-262 908.3 706 62.7
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.2e-261 905.2 704 64.3
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 7.2e-261 904.0 633 68.9
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 9.3e-261 903.7 722 61.9
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.0e-259 898.7 736 60.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 3.3e-258 895.2 726 60.9
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 5.7e-258 894.4 723 61.7
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 6.3e-257 891.0 661 65.5
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 3.4e-255 885.2 706 61.9
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 5.9e-255 884.4 714 60.2
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 5.9e-255 884.4 711 62.7
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.5e-253 879.0 710 61.1
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 2.5e-253 879.0 731 60.1
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.8e-251 872.8 731 61.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.9e-251 871.7 719 60.1
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 2.0e-250 869.4 629 66.9
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.1e-248 863.6 625 66.6
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 7.9e-244 847.4 633 65.4
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 8.8e-243 844.0 651 63.0
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.7e-241 839.7 738 56.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 8.2e-241 837.4 706 58.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 7.0e-240 834.3 730 57.9
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.2e-239 833.6 589 67.7
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.9e-239 831.2 727 57.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.3e-238 830.1 704 59.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.9e-238 828.9 989 47.6
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 8.5e-238 827.4 734 56.5
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 9.7e-234 813.9 541 71.5
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 8.5e-230 800.8 588 66.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.3e-225 786.9 568 65.5
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.0e-222 775.0 702 57.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.1e-221 773.9 856 49.2
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 3.6e-212 742.3 381 94.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.3e-203 713.0 983 44.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 8.3e-201 704.5 724 52.9
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 5.1e-182 642.1 453 68.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.5e-178 630.6 748 45.2
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.9e-168 597.0 487 61.6
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.1e-160 571.2 704 44.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 5.0e-145 519.2 627 44.3
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 3.7e-140 503.1 362 64.6
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.5e-130 469.5 429 55.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 8.0e-95 352.4 279 59.9
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.1e-88 332.0 254 63.4
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.9e-88 331.3 225 72.0
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.9e-80 304.7 270 58.5
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.6e-77 294.3 290 53.4
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 4.6e-66 256.9 289 47.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-61 242.3 148 74.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.1e-58 231.5 166 70.5
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.1e-42 178.3 260 38.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 3.4e-37 161.0 154 54.5
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.2e-36 158.3 231 39.4
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.2e-36 158.3 260 36.2
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-33 148.7 169 43.8
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 1.8e-30 138.7 109 67.9
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-28 131.3 114 54.4
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 3.8e-28 131.0 89 69.7
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 109 65.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 3.2e-27 127.9 84 72.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 5.5e-27 127.1 109 64.2
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.7e-26 124.8 153 41.8
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-26 124.0 84 71.4
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.7e-23 115.5 107 55.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 6.3e-23 113.6 131 51.1
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.3e-22 110.5 98 53.1
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-20 106.3 74 71.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-20 105.1 71 64.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 6.5e-20 103.6 97 56.7
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 2.5e-19 101.7 618 21.5
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-18 99.4 57 86.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.1e-18 97.1 89 60.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.8e-17 95.5 91 53.8
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 5.1e-17 94.0 66 66.7
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.5e-16 92.4 70 62.9
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 3.3e-16 91.3 74 68.9
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.2e-15 88.6 61 67.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.8e-15 88.2 58 67.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 3.1e-14 84.7 51 82.4
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.5e-13 80.9 64 64.1
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 7.7e-13 80.1 55 65.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.0e-12 79.7 52 71.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.7e-12 79.0 71 56.3
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-12 76.6 108 39.8
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-11 75.9 129 37.2
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 7.2e-11 73.6 167 29.3
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 9.4e-11 73.2 53 62.3
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.0e-09 69.7 43 76.7
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 2.0e-08 65.5 355 21.7
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.6e-08 65.1 48 64.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 4.4e-08 64.3 71 49.3
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-07 62.8 74 50.0
BolC7t40477H Brassica oleracea HOM05D048856 ORTHO05D042196 3.7e-07 61.2 52 57.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 8.2e-07 60.1 47 68.1
C07p00260 Brassica napus HOM05D048856 ORTHO05D042196 5.3e-06 57.4 52 57.7
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.3e-06 57.4 55 50.9


User provided reference genes

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