Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.4e-236 822.0 488 100.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 5.9e-235 817.4 488 99.2
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-192 676.4 498 86.9
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.6e-176 623.2 493 81.7
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-175 620.2 493 81.5
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 6.1e-171 604.7 519 74.2
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 5.9e-158 561.6 504 70.4
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.4e-156 557.0 501 71.9
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 5.7e-145 518.5 442 71.9
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 5.7e-145 518.5 525 66.3
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 3.7e-144 515.8 512 67.2
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 9.1e-143 511.1 497 66.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-139 499.6 499 63.7
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 9.8e-137 491.1 498 62.7
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 2.4e-135 486.5 504 64.5
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 2.4e-135 486.5 504 64.5
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.3e-133 480.7 497 61.8
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 3.0e-130 469.5 443 65.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 3.4e-129 466.1 507 65.1
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.4e-119 434.1 501 61.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 7.0e-119 431.8 541 55.1
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.1e-116 424.5 434 62.7
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.5e-116 424.1 433 61.9
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.9e-116 423.7 434 62.2
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.3e-116 422.9 433 62.4
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 9.5e-116 421.4 530 55.8
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.1e-115 420.2 429 62.7
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 6.2e-115 418.7 503 56.5
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.0e-114 417.9 543 54.1
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.8e-114 417.2 535 54.0
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.3e-114 416.8 537 54.0
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 3.1e-114 416.4 443 59.6
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 8.9e-114 414.8 406 63.3
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.2e-113 414.5 528 53.0
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.0e-113 413.7 533 54.2
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 2.6e-113 413.3 508 55.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.8e-113 412.1 429 61.5
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 7.5e-113 411.8 375 66.4
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 9.8e-113 411.4 521 54.9
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.3e-112 411.0 348 66.4
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.7e-112 410.6 503 60.4
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 6.4e-112 408.7 525 51.2
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.2e-111 406.4 423 59.6
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.4e-111 405.6 536 52.6
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 7.0e-111 405.2 508 51.8
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.0e-110 403.7 509 53.2
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.5e-110 402.9 375 62.9
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 3.5e-110 402.9 513 56.3
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 3.5e-110 402.9 411 60.8
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 7.8e-110 401.7 442 59.5
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.3e-109 401.0 512 54.5
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.3e-109 401.0 415 61.0
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.3e-109 400.2 494 56.3
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 3.0e-109 399.8 528 52.5
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 3.9e-109 399.4 493 58.2
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.0e-109 399.1 419 60.9
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.6e-109 398.7 418 60.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 6.6e-109 398.7 340 65.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.1e-108 397.9 405 60.7
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.5e-108 396.7 522 54.8
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 2.5e-108 396.7 521 52.0
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.3e-108 396.4 505 53.1
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 2.1e-107 393.7 489 50.1
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.1e-107 391.7 507 54.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.1e-106 391.3 324 67.0
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.4e-106 391.0 344 64.8
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.4e-106 391.0 445 55.7
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.0e-106 389.4 542 51.8
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 4.0e-106 389.4 376 61.2
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 5.2e-106 389.0 439 61.0
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 6.8e-106 388.7 365 61.9
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.5e-105 387.5 448 55.8
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 4.4e-105 386.0 375 60.5
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 5.8e-105 385.6 542 51.8
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 3.7e-104 382.9 434 57.8
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.9e-104 382.5 350 62.0
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 6.4e-104 382.1 438 58.9
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.9e-103 380.6 410 58.3
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.2e-103 379.8 396 57.8
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 3.2e-103 379.8 481 57.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 4.1e-103 379.4 504 52.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.1e-102 377.1 439 58.3
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.3e-101 374.4 407 59.7
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.6e-101 372.1 493 51.9
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 3.3e-100 369.8 384 59.4
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 2.8e-99 366.7 396 57.6
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 1.4e-98 364.4 519 53.9
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.2e-97 361.3 346 62.1
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 9.9e-97 358.2 401 63.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 8.4e-96 355.1 406 56.9
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 9.2e-95 351.7 297 63.3
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.6e-94 350.9 426 54.7
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 7.8e-94 348.6 287 67.2
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.9e-93 346.3 283 68.9
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.2e-91 341.3 387 56.1
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.1e-91 340.5 428 51.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 8.1e-91 338.6 451 50.6
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 8.9e-90 335.1 352 58.2
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 2.6e-89 333.6 453 50.1
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 4.4e-89 332.8 664 40.1
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.8e-88 329.7 394 49.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 8.4e-88 328.6 306 60.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.1e-87 328.2 290 66.2
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 2.6e-81 307.0 418 52.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.9e-80 303.5 319 53.3
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 8.4e-80 302.0 334 50.6
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.7e-78 297.0 243 66.7
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 4.6e-78 296.2 288 58.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.0e-77 293.5 292 59.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.1e-76 291.6 367 53.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 2.1e-75 287.3 364 56.0
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.6e-70 271.2 375 48.8
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 4.3e-68 263.1 297 57.6
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.2e-65 255.0 377 43.8
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.9e-63 247.7 371 42.9
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 5.5e-55 219.5 398 42.7
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.8e-53 214.5 210 52.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 4.3e-52 209.9 309 46.6
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.4e-52 209.1 236 51.7
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 1.5e-49 201.4 380 38.9
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 5.9e-49 199.5 324 42.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.6e-41 174.1 284 39.1
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 7.0e-34 149.4 166 56.0
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 9.1e-26 122.5 199 46.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 8.5e-24 115.9 72 79.2
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.2e-20 105.5 163 47.2
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 5.7e-20 103.2 163 46.6
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 5.7e-20 103.2 163 46.6
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.5e-15 86.7 150 46.7
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 8.8e-13 79.3 265 27.2
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 3.1e-10 70.9 59 64.4
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 1.0e-08 65.9 376 26.3
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-08 64.7 46 73.9


User provided reference genes

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