Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p00900 Brassica napus HOM05D003208 ORTHO05D026812 7.3e-37 156.8 82 100.0
BraA01t00089Z Brassica rapa HOM05D003208 ORTHO05D026812 7.3e-37 156.8 82 100.0
BcaNung00924 Brassica carinata HOM05D003208 ORTHO05D026812 6.9e-19 97.1 72 77.8
BcaNung00925 Brassica carinata HOM05D003208 ORTHO05D004103 1.2e-18 96.3 87 67.8
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 9.3e-16 86.7 160 40.0
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 9.3e-16 86.7 160 40.0
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 9.3e-16 86.7 160 40.0
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.2e-15 86.3 160 39.4
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 1.6e-15 85.9 160 40.0
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 1.6e-15 85.9 160 39.4
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 2.7e-15 85.1 160 39.4
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 7.9e-15 83.6 160 39.4
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 5.1e-14 80.9 161 37.9
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 2.8e-12 75.1 159 35.2
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 3.7e-12 74.7 159 34.6
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 6.2e-12 73.9 160 34.4
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 1.4e-11 72.8 160 35.0
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 1.5e-10 69.3 166 32.5
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 3.8e-09 64.7 158 30.4
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 5.0e-09 64.3 156 30.8
Manes.12G131000 Manihot esculenta HOM05D003208 ORTHO05D004103 5.0e-09 64.3 162 29.0
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 6.5e-09 63.9 157 29.3
Haze_24868 Corylus avellana HOM05D003208 ORTHO05D004103 6.5e-09 63.9 157 29.3
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 6.5e-09 63.9 158 29.1
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 6.5e-09 63.9 158 29.1
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 8.4e-09 63.5 158 29.1
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 1.1e-08 63.2 148 31.1
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 1.4e-08 62.8 162 29.6
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 1.9e-08 62.4 157 29.3
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 2.5e-08 62.0 157 29.9
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 3.2e-08 61.6 157 29.3
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 3.2e-08 61.6 159 28.9
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 4.2e-08 61.2 161 28.0
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 5.5e-08 60.8 162 29.0
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 7.1e-08 60.5 158 29.1
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 7.1e-08 60.5 157 28.7
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 7.1e-08 60.5 161 28.6
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 9.3e-08 60.1 157 28.7
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 9.3e-08 60.1 158 28.5
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 9.3e-08 60.1 157 28.7
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 9.3e-08 60.1 157 29.3
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 1.2e-07 59.7 153 29.4
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 1.2e-07 59.7 156 28.8
Psat3g056560 Pisum sativum HOM05D003208 ORTHO05D004103 1.2e-07 59.7 157 28.0
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 1.6e-07 59.3 157 29.3
Glyma.05G176233 Glycine max HOM05D003208 ORTHO05D004103 1.6e-07 59.3 157 28.0
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.1e-07 58.9 157 29.3
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 2.1e-07 58.9 158 27.8
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 2.1e-07 58.9 157 28.7
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 2.1e-07 58.9 157 28.0
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 2.7e-07 58.5 157 27.4
MD15G1321600 Malus domestica HOM05D003208 ORTHO05D004103 2.7e-07 58.5 157 27.4
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 2.7e-07 58.5 163 26.4
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 2.7e-07 58.5 157 28.0
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 2.7e-07 58.5 157 27.4
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 2.7e-07 58.5 157 28.0
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 3.5e-07 58.2 152 28.9
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 3.5e-07 58.2 152 28.9
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 3.5e-07 58.2 153 29.4
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 3.5e-07 58.2 153 29.4
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 3.5e-07 58.2 157 28.7
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 3.5e-07 58.2 152 28.3
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 3.5e-07 58.2 157 28.0
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 3.5e-07 58.2 157 28.0
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 3.5e-07 58.2 153 29.4
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 4.6e-07 57.8 153 29.4
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 4.6e-07 57.8 157 28.7
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 4.6e-07 57.8 158 26.6
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 4.6e-07 57.8 36 77.8
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 6.1e-07 57.4 153 29.4
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 6.1e-07 57.4 156 27.6
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 6.1e-07 57.4 156 28.2
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 6.1e-07 57.4 157 27.4
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 7.9e-07 57.0 165 27.9
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 7.9e-07 57.0 156 28.8
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 1.0e-06 56.6 157 26.1
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 1.0e-06 56.6 153 29.4
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 1.0e-06 56.6 157 27.4
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 1.0e-06 56.6 38 71.1
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 1.0e-06 56.6 44 59.1
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 1.3e-06 56.2 157 28.0
AL7G11560 Arabidopsis lyrata HOM05D003208 ORTHO05D026812 1.3e-06 56.2 32 81.2
Lalb_Chr23g0277521 Lupinus albus HOM05D003208 ORTHO05D004103 1.3e-06 56.2 156 28.8
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.1
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.1
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.8
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.1
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.8
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.1
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.8
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 1.8e-06 55.8 153 28.1
Ca_07084_v3 Cicer arietinum L. HOM05D000036 ORTHO05D015518 1.8e-06 55.8 63 47.6
Glyma.18G015632 Glycine max HOM05D003208 ORTHO05D004103 1.8e-06 55.8 156 27.6
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 2.3e-06 55.5 157 26.8
BcaC02g08665 Brassica carinata HOM05D003208 ORTHO05D004103 2.3e-06 55.5 41 65.9
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 2.3e-06 55.5 47 59.6
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 2.3e-06 55.5 165 27.3
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 2.3e-06 55.5 157 26.8
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 2.3e-06 55.5 165 27.3
Sopen11g004910 Solanum pennellii HOM05D003208 ORTHO05D004103 2.3e-06 55.5 165 27.3
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 3.0e-06 55.1 156 27.6
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 3.0e-06 55.1 157 26.8
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 3.9e-06 54.7 157 26.1
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 3.9e-06 54.7 157 26.1
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 5.1e-06 54.3 156 26.9
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 6.7e-06 53.9 40 65.0
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 8.7e-06 53.5 162 25.3
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 8.7e-06 53.5 165 26.1


User provided reference genes

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