PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.12
Description: misc.peroxidases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	5	17	CH_ath_359	3	3	0.000344485
Brachypodium distachyon	Bd1	17	CH_bdi_54	6	6	0.000000000586025
Brachypodium distachyon	Bd1	17	CH_bdi_88	5	5	0.000000112614
Brachypodium distachyon	Bd2	17	CH_bdi_16	9	10	7.86937e-16
Brachypodium distachyon	Bd2	17	CH_bdi_168	4	4	0.0000214859
Brachypodium distachyon	Bd2	17	CH_bdi_38	7	8	0.000000000024111
Brachypodium distachyon	Bd2	17	CH_bdi_173	5	10	0.0000277637
Brachypodium distachyon	Bd2	17	CH_bdi_53	6	6	0.000000000586025
Brachypodium distachyon	Bd2	17	CH_bdi_167	4	4	0.0000214859
Brachypodium distachyon	Bd3	17	CH_bdi_61	6	7	0.00000000408385
Brachypodium distachyon	Bd5	17	CH_bdi_57	7	11	0.00000000098114
Brachypodium distachyon	Bd1	18	CH_bdi_47	12	240	0.000200953
Brachypodium distachyon	Bd2	18	CH_bdi_19	16	182	0.0000000000935385
Brachypodium distachyon	Bd2	18	CH_bdi_24	16	268	0.0000000385146
Brachypodium distachyon	Bd2	19	CH_bdi_4	6	10	0.00000000927531
Brachypodium distachyon	Bd2	19	CH_bdi_2	6	8	0.00000000124387
Brachypodium distachyon	Bd5	19	CH_bdi_7	6	11	0.0000000203469
Brachypodium distachyon	Bd2	20	CH_bdi_1	12	182	0.0000000583176
Oryza sativa ssp. japonica	1	17	CH_osa_200	5	10	0.00000153769
Oryza sativa ssp. japonica	1	17	CH_osa_138	6	14	0.0000000456706
Oryza sativa ssp. japonica	1	17	CH_osa_292	4	6	0.0000364561
Oryza sativa ssp. japonica	2	17	CH_osa_242	6	29	0.00000699451
Oryza sativa ssp. japonica	3	17	CH_osa_68	7	13	0.000000000065284
Oryza sativa ssp. japonica	4	17	CH_osa_125	6	12	0.0000000141132
Oryza sativa ssp. japonica	5	17	CH_osa_69	7	13	0.000000000065284
Oryza sativa ssp. japonica	6	17	CH_osa_212	4	4	0.00000244035
Oryza sativa ssp. japonica	6	17	CH_osa_144	6	15	0.0000000759538
Oryza sativa ssp. japonica	7	17	CH_osa_48	7	8	0.000000000000307697
Oryza sativa ssp. japonica	7	17	CH_osa_133	5	6	0.0000000369222
Oryza sativa ssp. japonica	7	17	CH_osa_229	5	12	0.00000481239
Oryza sativa ssp. japonica	1	18	CH_osa_87	11	275	0.0000106867
Oryza sativa ssp. japonica	1	19	CH_osa_34	4	14	0.000348924
Oryza sativa ssp. japonica	5	19	CH_osa_19	4	8	0.0000245842
Oryza sativa ssp. japonica	6	19	CH_osa_8	4	4	0.000000352965
Physcomitrella patens	scaffold_256	17	CH_ppa_51	4	16	0.000539801
Populus trichocarpa	Chr01	17	CH_ptr_154	7	22	0.00000000430843
Populus trichocarpa	Chr03	17	CH_ptr_102	6	6	0.0000000000106518
Populus trichocarpa	Chr07	17	CH_ptr_251	4	4	0.00000172249
Populus trichocarpa	Chr16	17	CH_ptr_468	3	3	0.000682395
Populus trichocarpa	Chr17	17	CH_ptr_469	3	3	0.000682395
Setaria italica	scaffold_1	17	CH_sit_70	7	8	0.00000000000765679
Setaria italica	scaffold_11	17	CH_sit_192	5	7	0.00000111956
Setaria italica	scaffold_2	17	CH_sit_63	7	7	0.000000000000960646
Setaria italica	scaffold_2	17	CH_sit_32	11	20	4.60459e-17
Setaria italica	scaffold_3	17	CH_sit_323	4	5	0.0000626273
Setaria italica	scaffold_3	17	CH_sit_46	8	8	0.00000000000000402274
Setaria italica	scaffold_4	17	CH_sit_322	4	5	0.0000626273
Setaria italica	scaffold_4	17	CH_sit_261	4	4	0.0000125688
Setaria italica	scaffold_5	17	CH_sit_364	4	6	0.000187235
Setaria italica	scaffold_5	17	CH_sit_365	4	6	0.000187235
Setaria italica	scaffold_9	17	CH_sit_321	4	5	0.0000626273
Setaria italica	scaffold_9	17	CH_sit_260	4	4	0.0000125688
Setaria italica	scaffold_2	18	CH_sit_28	11	20	4.60459e-17
Setaria italica	scaffold_2	19	CH_sit_4	5	6	0.0000000214042
Solanum lycopersicum	ch01	17	CH_sly_237	4	4	0.00000330874
Solanum lycopersicum	ch05	17	CH_sly_236	4	4	0.00000330874
Solanum lycopersicum	ch07	17	CH_sly_286	4	5	0.0000165028
Solanum lycopersicum	ch10	17	CH_sly_159	5	6	0.0000000604479
Vitis vinifera	chr1	17	CH_vvi_61	8	10	0.00000000000000437633
Vitis vinifera	chr12	17	CH_vvi_105	6	7	0.0000000000948876
Vitis vinifera	chr18	17	CH_vvi_217	4	4	0.0000017868
Vitis vinifera	chr1	18	CH_vvi_57	10	77	0.000000000621441
Zea mays	1	17	CH_zma_124	4	5	0.0000271602
Zea mays	10	17	CH_zma_3	13	18	3.41094e-24
Zea mays	2	17	CH_zma_46	5	5	0.0000000196949
Zea mays	5	17	CH_zma_126	4	5	0.0000271602
Zea mays	5	17	CH_zma_159	4	7	0.000189011
Zea mays	7	17	CH_zma_7	9	10	3.04542e-17
Zea mays	7	17	CH_zma_125	4	5	0.0000271602
Zea mays	10	18	CH_zma_2	13	18	3.41094e-24
Zea mays	7	18	CH_zma_13	13	158	0.000000000952104
Zea mays	10	19	CH_zma_4	5	13	0.00000450289
Zea mays	2	19	CH_zma_3	4	4	0.00000139687
Zea mays	7	19	CH_zma_14	4	10	0.000289714

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V