PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 20.2.99
Description: stress.abiotic.unspecified

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_232	4	4	0.00000502361
Arabidopsis thaliana	1	17	CH_ath_52	8	8	6.54165e-16
Arabidopsis thaliana	3	17	CH_ath_192	5	8	0.000000954658
Arabidopsis thaliana	5	17	CH_ath_26	13	34	2.05066e-19
Arabidopsis thaliana	5	18	CH_ath_28	13	34	2.05066e-19
Brachypodium distachyon	Bd3	17	CH_bdi_12	8	8	4.12567e-17
Brachypodium distachyon	Bd4	17	CH_bdi_112	4	4	0.00000117954
Brachypodium distachyon	Bd3	18	CH_bdi_26	11	226	0.000000493107
Oryza sativa ssp. japonica	12	17	CH_osa_171	4	4	0.000000322119
Oryza sativa ssp. japonica	2	17	CH_osa_356	3	3	0.000211458
Oryza sativa ssp. japonica	3	17	CH_osa_172	4	4	0.000000322119
Oryza sativa ssp. japonica	3	17	CH_osa_355	3	3	0.000211458
Oryza sativa ssp. japonica	8	17	CH_osa_11	11	16	1.89589e-23
Oryza sativa ssp. japonica	9	17	CH_osa_357	3	3	0.000211458
Oryza sativa ssp. japonica	8	18	CH_osa_12	11	16	1.89589e-23
Physcomitrella patens	scaffold_68	17	CH_ppa_59	3	8	0.000853181
Populus trichocarpa	Chr04	17	CH_ptr_180	5	5	0.0000000360336
Populus trichocarpa	Chr11	17	CH_ptr_391	5	17	0.000214536
Populus trichocarpa	Chr13	17	CH_ptr_95	7	8	0.00000000000417385
Populus trichocarpa	Chr13	17	CH_ptr_21	12	12	3.75015e-25
Populus trichocarpa	Chr19	17	CH_ptr_52	9	11	4.04653e-16
Populus trichocarpa	Chr13	18	CH_ptr_19	12	12	3.75015e-25
Populus trichocarpa	Chr19	18	CH_ptr_63	10	36	0.0000000000064201
Setaria italica	scaffold_1	17	CH_sit_187	4	4	0.00000090407
Setaria italica	scaffold_5	17	CH_sit_408	3	3	0.000409694
Setaria italica	scaffold_6	17	CH_sit_5	15	18	1.82199e-33
Setaria italica	scaffold_6	18	CH_sit_5	15	18	1.82199e-33
Solanum lycopersicum	ch01	17	CH_sly_272	4	5	0.0000126404
Solanum lycopersicum	ch04	17	CH_sly_194	5	8	0.000000401682
Solanum lycopersicum	ch09	17	CH_sly_470	4	11	0.000822774
Solanum lycopersicum	ch09	17	CH_sly_153	5	6	0.000000043243
Solanum lycopersicum	ch11	17	CH_sly_229	4	4	0.00000253393
Vitis vinifera	chr1	17	CH_vvi_64	8	10	0.00000000000000906261
Vitis vinifera	chr14	17	CH_vvi_20	17	38	4.78054e-29
Vitis vinifera	chr14	17	CH_vvi_437	3	3	0.000826941
Vitis vinifera	chr7	17	CH_vvi_436	3	3	0.000826941
Vitis vinifera	chr1	18	CH_vvi_65	11	128	0.00000000845016
Vitis vinifera	chr14	18	CH_vvi_21	17	38	4.78054e-29
Zea mays	10	17	CH_zma_44	5	7	0.0000000134824

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V