PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 17.5.1
Description: hormone metabolism.ethylene.synthesis-degradation

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd1	17	CH_bdi_28	7	8	0.000000000000335114
Brachypodium distachyon	Bd3	17	CH_bdi_251	3	3	0.000674502
Brachypodium distachyon	Bd3	17	CH_bdi_250	3	3	0.000674502
Brachypodium distachyon	Bd3	19	CH_bdi_16	3	3	0.000427463
Oryza sativa ssp. japonica	6	17	CH_osa_90	6	14	0.000000000734213
Oryza sativa ssp. japonica	8	17	CH_osa_197	5	17	0.00000121845
Physcomitrella patens	scaffold_299	17	CH_ppa_48	3	4	0.000489013
Populus trichocarpa	Chr01	17	CH_ptr_134	6	7	0.000000000790247
Populus trichocarpa	Chr11	17	CH_ptr_298	5	10	0.00000759638
Setaria italica	scaffold_3	17	CH_sit_455	3	3	0.000980328
Setaria italica	scaffold_4	17	CH_sit_62	7	8	0.000000000000575023
Setaria italica	scaffold_9	17	CH_sit_126	5	5	0.00000000856843
Setaria italica	scaffold_9	17	CH_sit_149	5	6	0.0000000512843
Setaria italica	scaffold_4	18	CH_sit_50	11	179	0.000000326457
Setaria italica	scaffold_4	19	CH_sit_5	4	4	0.00000115393
Solanum lycopersicum	ch02	17	CH_sly_27	11	15	1.06061e-18
Solanum lycopersicum	ch03	17	CH_sly_287	4	4	0.0000179138
Solanum lycopersicum	ch09	17	CH_sly_5	16	17	2.29734e-32
Solanum lycopersicum	ch09	17	CH_sly_342	4	5	0.0000892301
Solanum lycopersicum	ch10	17	CH_sly_392	4	6	0.000266678
Solanum lycopersicum	ch11	17	CH_sly_288	4	4	0.0000179138
Solanum lycopersicum	ch02	18	CH_sly_23	11	15	1.06061e-18
Solanum lycopersicum	ch09	18	CH_sly_5	16	17	2.29734e-32
Vitis vinifera	chr10	17	CH_vvi_10	18	24	1.71669e-32
Vitis vinifera	chr11	17	CH_vvi_282	4	4	0.0000214353
Vitis vinifera	chr2	17	CH_vvi_66	9	12	0.0000000000000172291
Vitis vinifera	chr3	17	CH_vvi_40	12	20	1.2208e-18
Vitis vinifera	chr5	17	CH_vvi_13	16	18	8.71135e-31
Vitis vinifera	chr10	18	CH_vvi_10	18	24	1.71669e-32
Vitis vinifera	chr2	18	CH_vvi_103	10	144	0.000166182
Vitis vinifera	chr3	18	CH_vvi_34	12	20	1.2208e-18
Vitis vinifera	chr5	18	CH_vvi_14	16	18	8.71135e-31
Vitis vinifera	chr10	19	CH_vvi_34	5	22	0.000345733
Zea mays	10	17	CH_zma_56	6	18	0.0000000389464

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V