PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR006501
Description: Pectinesterase inhibitor domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	13	CH_ath_148	7	17	0.00000000497253
Arabidopsis thaliana	5	13	CH_ath_165	5	5	0.0000000211968
Arabidopsis thaliana	5	13	CH_ath_57	7	7	0.000000000000263685
Brachypodium distachyon	Bd1	13	CH_bdi_267	5	20	0.000019627
Brachypodium distachyon	Bd2	13	CH_bdi_392	3	3	0.000289125
Brachypodium distachyon	Bd3	13	CH_bdi_393	3	3	0.000289125
Carica papaya	supercontig_145	13	CH_cpa_372	4	13	0.000375958
Carica papaya	supercontig_151	13	CH_cpa_313	3	3	0.000244535
Carica papaya	supercontig_29	13	CH_cpa_460	3	4	0.000976491
Carica papaya	supercontig_3	13	CH_cpa_87	5	8	0.0000000635611
Carica papaya	supercontig_49	13	CH_cpa_114	4	4	0.000000534205
Carica papaya	supercontig_9	13	CH_cpa_461	3	4	0.000976491
Musa acuminata	chr3	13	CH_mac_105	4	4	0.0000001894
Musa acuminata	chr9	13	CH_mac_104	4	4	0.0000001894
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_134	7	12	0.000000000000296934
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_640	4	11	0.0000589938
Oryza sativa ssp. indica	Chr08	15	CH_osaindica_28	4	10	0.0000143037
Oryza sativa ssp. japonica	10	13	CH_osa_672	4	14	0.000182684
Oryza sativa ssp. japonica	11	13	CH_osa_792	3	4	0.00055825
Oryza sativa ssp. japonica	8	13	CH_osa_175	6	11	0.000000000141794
Populus trichocarpa	Chr02	13	CH_ptr_787	3	3	0.000802949
Populus trichocarpa	Chr05	13	CH_ptr_109	8	11	0.0000000000000160785
Populus trichocarpa	Chr06	13	CH_ptr_188	6	7	0.000000000103142
Populus trichocarpa	Chr12	13	CH_ptr_346	5	8	0.000000314181
Populus trichocarpa	Chr13	13	CH_ptr_557	4	7	0.0000744033
Populus trichocarpa	Chr15	13	CH_ptr_72	10	15	1.86138e-18
Populus trichocarpa	Chr15	14	CH_ptr_62	10	15	1.86138e-18
Populus trichocarpa	Chr05	15	CH_ptr_23	4	11	0.000111084
Setaria italica	scaffold_1	13	CH_sit_626	3	3	0.000249776
Setaria italica	scaffold_2	13	CH_sit_625	3	3	0.000249776
Setaria italica	scaffold_5	13	CH_sit_627	3	3	0.000249776
Setaria italica	scaffold_6	13	CH_sit_58	8	9	4.28546e-17
Setaria italica	scaffold_5	15	CH_sit_18	3	3	0.000118247
Solanum lycopersicum	ch01	13	CH_sly_471	4	7	0.0000418739
Solanum lycopersicum	ch03	13	CH_sly_127	8	21	0.000000000006784
Solanum lycopersicum	ch08	13	CH_sly_706	3	3	0.000505335
Solanum lycopersicum	ch12	13	CH_sly_707	3	3	0.000505335
Solanum lycopersicum	ch03	14	CH_sly_64	11	276	0.00000314284
Sorghum bicolor	chr_4	13	CH_sbi_305	4	4	0.000000886604
Sorghum bicolor	chr_7	13	CH_sbi_394	4	6	0.0000132519
Sorghum bicolor	chr_7	13	CH_sbi_627	3	3	0.000401176
Sorghum bicolor	chr_8	13	CH_sbi_170	5	5	0.00000000193368
Vitis vinifera	chr16	13	CH_vvi_149	5	7	0.000000000102464
Zea mays	5	13	CH_zma_417	3	3	0.00023597
Zea mays	7	13	CH_zma_202	5	15	0.00000213326

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V