PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR003591
Description: Leucine-rich repeat, typical subtype

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brachypodium distachyon	Bd3	13	CH_bdi_13	13	18	1.1262e-19
Brachypodium distachyon	Bd3	14	CH_bdi_10	13	18	1.1262e-19
Musa acuminata	chr9	13	CH_mac_94	7	12	0.0000000578962
Musa acuminata	chrUn_random	13	CH_mac_54	8	14	0.00000000170914
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_267	11	54	0.0000000064849
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_7	21	32	1.87677e-33
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_64	18	71	1.19771e-18
Oryza sativa ssp. indica	Chr10	13	CH_osaindica_61	15	35	5.20338e-19
Oryza sativa ssp. indica	Chr11	13	CH_osaindica_167	14	80	0.0000000000269507
Oryza sativa ssp. indica	Chr02	14	CH_osaindica_7	21	32	1.87677e-33
Oryza sativa ssp. indica	Chr06	14	CH_osaindica_52	18	71	1.19771e-18
Oryza sativa ssp. indica	Chr10	14	CH_osaindica_51	15	35	5.20338e-19
Oryza sativa ssp. indica	Chr11	14	CH_osaindica_71	16	91	0.00000000000021328
Oryza sativa ssp. japonica	1	13	CH_osa_105	11	25	0.000000000000122056
Oryza sativa ssp. japonica	2	13	CH_osa_406	9	51	0.00000190015
Oryza sativa ssp. japonica	6	13	CH_osa_186	12	64	0.000000000442687
Oryza sativa ssp. japonica	1	14	CH_osa_69	11	25	0.000000000000122056
Oryza sativa ssp. japonica	6	14	CH_osa_85	12	64	0.000000000442687
Populus trichocarpa	Chr01	13	CH_ptr_414	8	21	0.00000233123
Populus trichocarpa	Chr11	13	CH_ptr_465	8	25	0.0000118922
Setaria italica	scaffold_1	13	CH_sit_15	20	36	2.04491e-27
Setaria italica	scaffold_4	13	CH_sit_616	7	28	0.000176832
Setaria italica	scaffold_5	13	CH_sit_365	5	5	0.00000218547
Setaria italica	scaffold_5	13	CH_sit_80	12	22	0.00000000000000579964
Setaria italica	scaffold_8	13	CH_sit_218	13	77	0.00000000930893
Setaria italica	scaffold_1	14	CH_sit_18	20	36	2.04491e-27
Setaria italica	scaffold_5	14	CH_sit_41	12	22	0.00000000000000579964
Setaria italica	scaffold_8	14	CH_sit_51	13	77	0.00000000930893
Solanum lycopersicum	ch07	13	CH_sly_357	5	6	0.00000277523
Solanum lycopersicum	ch12	13	CH_sly_204	9	28	0.00000000530705
Sorghum bicolor	chr_2	13	CH_sbi_177	8	15	0.00000000228958
Sorghum bicolor	chr_6	13	CH_sbi_506	4	4	0.000116736
Sorghum bicolor	chr_2	14	CH_sbi_60	14	150	0.000000423246
Vitis vinifera	chr14	13	CH_vvi_580	5	8	0.000296777
Vitis vinifera	chr16	13	CH_vvi_646	8	41	0.000552092
Vitis vinifera	chr18	13	CH_vvi_595	9	56	0.000428198
Vitis vinifera	chr6	13	CH_vvi_339	6	8	0.00000171218
Vitis vinifera	chr9	13	CH_vvi_295	8	19	0.000000545777
Vitis vinifera	chr9	14	CH_vvi_68	24	300	0.00000000393623
Vitis vinifera	chr6	15	CH_vvi_9	6	8	0.00000010919

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V