PLAZA 3.0 Monocots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR002213
Description: UDP-glucuronosyl/UDP-glucosyltransferase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	13	CH_ath_185	5	6	0.0000000985519
Arabidopsis thaliana	2	13	CH_ath_118	6	7	0.000000000386681
Arabidopsis thaliana	2	13	CH_ath_328	4	5	0.0000242072
Arabidopsis thaliana	3	13	CH_ath_98	7	11	0.0000000000602367
Arabidopsis thaliana	3	13	CH_ath_257	5	9	0.00000205205
Arabidopsis thaliana	4	13	CH_ath_258	7	38	0.00000212877
Arabidopsis thaliana	5	13	CH_ath_161	5	5	0.000000016472
Brachypodium distachyon	Bd1	13	CH_bdi_453	4	6	0.000678682
Brachypodium distachyon	Bd1	13	CH_bdi_168	5	5	0.000000289921
Brachypodium distachyon	Bd1	13	CH_bdi_122	6	7	0.0000000127267
Brachypodium distachyon	Bd1	13	CH_bdi_383	4	5	0.000227389
Brachypodium distachyon	Bd2	13	CH_bdi_167	5	5	0.000000289921
Brachypodium distachyon	Bd2	13	CH_bdi_58	7	7	0.0000000000114575
Brachypodium distachyon	Bd3	13	CH_bdi_335	6	22	0.00012506
Brachypodium distachyon	Bd5	13	CH_bdi_117	7	12	0.00000000882805
Brachypodium distachyon	Bd5	13	CH_bdi_293	4	4	0.0000457115
Carica papaya	supercontig_19	13	CH_cpa_130	4	4	0.00000163535
Carica papaya	supercontig_5	13	CH_cpa_28	7	9	0.00000000000130781
Carica papaya	supercontig_59	13	CH_cpa_379	3	3	0.000561444
Carica papaya	supercontig_8	13	CH_cpa_380	3	3	0.000561444
Carica papaya	supercontig_81	13	CH_cpa_21	9	20	0.0000000000000433598
Musa acuminata	chr10	13	CH_mac_438	3	3	0.000744899
Musa acuminata	chr2	13	CH_mac_66	5	5	0.00000000517747
Musa acuminata	chr4	13	CH_mac_439	3	3	0.000744899
Musa acuminata	chr6	13	CH_mac_437	3	3	0.000744899
Musa acuminata	chrUn_random	13	CH_mac_480	6	65	0.000973576
Musa acuminata	chr2	15	CH_mac_24	3	3	0.000494828
Musa acuminata	chr4	15	CH_mac_25	3	3	0.000494828
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_216	7	11	0.00000000039052
Oryza sativa ssp. indica	Chr01	13	CH_osaindica_536	4	4	0.0000170901
Oryza sativa ssp. indica	Chr02	13	CH_osaindica_177	7	9	0.0000000000429103
Oryza sativa ssp. indica	Chr03	13	CH_osaindica_795	4	6	0.000254646
Oryza sativa ssp. indica	Chr04	13	CH_osaindica_657	4	5	0.0000851659
Oryza sativa ssp. indica	Chr05	13	CH_osaindica_81	10	15	2.39031e-16
Oryza sativa ssp. indica	Chr06	13	CH_osaindica_54	17	79	8.17551e-20
Oryza sativa ssp. indica	Chr07	13	CH_osaindica_477	7	33	0.00000467042
Oryza sativa ssp. indica	Chr08	13	CH_osaindica_902	4	7	0.000592194
Oryza sativa ssp. indica	Chr09	13	CH_osaindica_796	4	6	0.000254646
Oryza sativa ssp. indica	Chr05	14	CH_osaindica_62	10	15	2.39031e-16
Oryza sativa ssp. indica	Chr06	14	CH_osaindica_42	18	85	4.73919e-21
Oryza sativa ssp. indica	Chr08	15	CH_osaindica_40	4	7	0.0000706435
Oryza sativa ssp. japonica	1	13	CH_osa_116	8	11	0.00000000000058485
Oryza sativa ssp. japonica	10	13	CH_osa_710	4	6	0.000218849
Oryza sativa ssp. japonica	2	13	CH_osa_309	6	11	0.000000105108
Oryza sativa ssp. japonica	2	13	CH_osa_666	5	15	0.00016971
Oryza sativa ssp. japonica	3	13	CH_osa_389	5	7	0.00000121875
Oryza sativa ssp. japonica	4	13	CH_osa_593	6	28	0.0000808956
Oryza sativa ssp. japonica	4	13	CH_osa_151	9	24	0.0000000000173586
Oryza sativa ssp. japonica	4	13	CH_osa_443	8	58	0.000005765
Oryza sativa ssp. japonica	5	13	CH_osa_590	4	5	0.0000731839
Oryza sativa ssp. japonica	5	13	CH_osa_60	10	12	3.56806e-18
Oryza sativa ssp. japonica	6	13	CH_osa_226	8	25	0.00000000365054
Oryza sativa ssp. japonica	7	13	CH_osa_450	5	9	0.00000726406
Oryza sativa ssp. japonica	7	13	CH_osa_473	7	39	0.0000125654
Oryza sativa ssp. japonica	7	13	CH_osa_380	7	28	0.00000100477
Oryza sativa ssp. japonica	9	13	CH_osa_711	4	6	0.000218849
Oryza sativa ssp. japonica	4	14	CH_osa_110	10	108	0.00000149001
Oryza sativa ssp. japonica	5	14	CH_osa_52	10	12	3.56806e-18
Oryza sativa ssp. japonica	6	14	CH_osa_84	13	122	0.000000000232049
Oryza sativa ssp. japonica	7	14	CH_osa_105	13	215	0.000000352678
Oryza sativa ssp. japonica	5	15	CH_osa_84	4	10	0.000225029
Populus trichocarpa	Chr01	13	CH_ptr_84	11	16	7.77761e-17
Populus trichocarpa	Chr01	13	CH_ptr_651	5	12	0.000281184
Populus trichocarpa	Chr04	13	CH_ptr_112	10	16	0.0000000000000236276
Populus trichocarpa	Chr06	13	CH_ptr_267	6	7	0.0000000157
Populus trichocarpa	Chr06	13	CH_ptr_79	11	15	2.44396e-17
Populus trichocarpa	Chr07	13	CH_ptr_492	5	8	0.0000202947
Populus trichocarpa	Chr07	13	CH_ptr_497	6	17	0.0000263337
Populus trichocarpa	Chr09	13	CH_ptr_544	4	4	0.0000598341
Populus trichocarpa	Chr09	13	CH_ptr_233	10	41	0.00000000288326
Populus trichocarpa	Chr16	13	CH_ptr_7	30	58	1.2559e-46
Populus trichocarpa	Chr17	13	CH_ptr_653	4	5	0.000297691
Populus trichocarpa	Chr17	13	CH_ptr_226	6	6	0.00000000225471
Populus trichocarpa	Chr01	14	CH_ptr_67	11	16	7.77761e-17
Populus trichocarpa	Chr04	14	CH_ptr_75	10	16	0.0000000000000236276
Populus trichocarpa	Chr06	14	CH_ptr_64	11	15	2.44396e-17
Populus trichocarpa	Chr09	14	CH_ptr_90	10	41	0.00000000288326
Populus trichocarpa	Chr16	14	CH_ptr_4	44	86	4.08765e-70
Populus trichocarpa	Chr17	14	CH_ptr_107	12	202	0.000264263
Populus trichocarpa	Chr06	15	CH_ptr_31	4	10	0.000651859
Setaria italica	scaffold_1	13	CH_sit_357	5	6	0.00000207805
Setaria italica	scaffold_1	13	CH_sit_633	4	5	0.000278018
Setaria italica	scaffold_2	13	CH_sit_149	7	8	0.000000000106068
Setaria italica	scaffold_2	13	CH_sit_353	6	12	0.00000193226
Setaria italica	scaffold_2	13	CH_sit_66	11	16	7.85987e-17
Setaria italica	scaffold_3	13	CH_sit_358	5	6	0.00000207805
Setaria italica	scaffold_3	13	CH_sit_359	5	6	0.00000207805
Setaria italica	scaffold_5	13	CH_sit_56	11	15	2.46994e-17
Setaria italica	scaffold_7	13	CH_sit_360	5	6	0.00000207805
Setaria italica	scaffold_7	13	CH_sit_636	4	5	0.000278018
Setaria italica	scaffold_7	13	CH_sit_635	4	5	0.000278018
Setaria italica	scaffold_8	13	CH_sit_634	4	5	0.000278018
Setaria italica	scaffold_9	13	CH_sit_494	4	4	0.0000558836
Setaria italica	scaffold_9	13	CH_sit_25	12	13	1.44326e-21
Setaria italica	scaffold_2	14	CH_sit_37	11	16	7.85987e-17
Setaria italica	scaffold_2	14	CH_sit_64	10	76	0.00000201989
Setaria italica	scaffold_5	14	CH_sit_35	11	15	2.46994e-17
Setaria italica	scaffold_9	14	CH_sit_25	12	13	1.44326e-21
Setaria italica	scaffold_7	15	CH_sit_3	5	6	0.0000000939691
Solanum lycopersicum	ch01	13	CH_sly_265	6	9	0.000000101405
Solanum lycopersicum	ch03	13	CH_sly_97	9	12	0.00000000000004649
Solanum lycopersicum	ch04	13	CH_sly_280	5	5	0.000000216726
Solanum lycopersicum	ch04	13	CH_sly_128	7	7	0.00000000000688835
Solanum lycopersicum	ch07	13	CH_sly_52	15	46	2.50259e-18
Solanum lycopersicum	ch08	13	CH_sly_146	7	8	0.0000000000548355
Solanum lycopersicum	ch10	13	CH_sly_465	4	4	0.0000381525
Solanum lycopersicum	ch11	13	CH_sly_87	10	16	0.00000000000000922978
Solanum lycopersicum	ch11	13	CH_sly_147	7	8	0.0000000000548355
Solanum lycopersicum	ch12	13	CH_sly_464	4	4	0.0000381525
Solanum lycopersicum	ch03	14	CH_sly_49	11	31	0.000000000000500807
Solanum lycopersicum	ch07	14	CH_sly_37	15	46	2.50259e-18
Solanum lycopersicum	ch11	14	CH_sly_44	10	16	0.00000000000000922978
Sorghum bicolor	chr_1	13	CH_sbi_171	6	6	0.00000000208211
Sorghum bicolor	chr_10	13	CH_sbi_403	5	8	0.0000185322
Sorghum bicolor	chr_2	13	CH_sbi_330	6	12	0.00000186336
Sorghum bicolor	chr_2	13	CH_sbi_87	8	8	0.000000000000078772
Sorghum bicolor	chr_2	13	CH_sbi_333	5	6	0.00000200636
Sorghum bicolor	chr_3	13	CH_sbi_442	4	4	0.0000540147
Sorghum bicolor	chr_3	13	CH_sbi_214	7	13	0.0000000213242
Sorghum bicolor	chr_6	13	CH_sbi_373	5	7	0.00000698583
Sorghum bicolor	chr_9	13	CH_sbi_332	5	6	0.00000200636
Sorghum bicolor	chr_9	13	CH_sbi_154	7	9	0.000000000457151
Sorghum bicolor	chr_2	14	CH_sbi_61	10	66	0.000000452395
Sorghum bicolor	chr_2	14	CH_sbi_74	12	183	0.0000836907
Sorghum bicolor	chr_9	14	CH_sbi_75	12	190	0.000128056
Sorghum bicolor	chr_6	15	CH_sbi_17	4	7	0.000225379
Vitis vinifera	chr13	13	CH_vvi_254	7	20	0.000000130235
Vitis vinifera	chr14	13	CH_vvi_411	4	4	0.0000159014
Vitis vinifera	chr17	13	CH_vvi_164	6	6	0.000000000371405
Vitis vinifera	chr18	13	CH_vvi_336	5	7	0.00000160701
Vitis vinifera	chr19	13	CH_vvi_184	6	7	0.0000000025891
Vitis vinifera	chr5	13	CH_vvi_114	10	26	0.000000000000915078
Vitis vinifera	chr5	13	CH_vvi_156	7	10	0.000000000210233
Vitis vinifera	chr6	13	CH_vvi_335	5	7	0.00000160701
Vitis vinifera	chr5	14	CH_vvi_57	10	26	0.000000000000915078
Vitis vinifera	chr13	15	CH_vvi_43	5	20	0.00018546
Vitis vinifera	chr14	15	CH_vvi_15	4	4	0.00000372693
Vitis vinifera	chr19	15	CH_vvi_12	5	7	0.000000260511
Zea mays	1	13	CH_zma_419	4	6	0.000280312
Zea mays	1	13	CH_zma_269	4	4	0.0000188268
Zea mays	4	13	CH_zma_351	4	4	0.0000937849
Zea mays	5	13	CH_zma_27	10	15	4.8459e-16
Zea mays	7	13	CH_zma_350	4	5	0.0000937849
Zea mays	8	13	CH_zma_420	4	6	0.000280312
Zea mays	5	14	CH_zma_13	10	15	4.8459e-16

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V