Anchorpoints
- Gene id
- SL10G080570
- Organism
- Solanum lycopersicum
Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL5G28560 | No description available. | scaffold_5 | + | View |
AL4G29160 | No description available. | scaffold_4 | - | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G58040 | seven in absentia of Arabidopsis 2 (SINAT2); FUNCTIONS IN: protein binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT2G41980.1); Has 1862 Blast hits to 1847 proteins in 701 species: Archae - 0; Bacteria - 0; Metazoa - 1276; Fungi - 4; Plants - 482; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). seven in absentia of Arabidopsis 2 Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 3 | + | View |
AT2G41980 | Protein with RING/U-box and TRAF-like domains Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: seven in absentia of Arabidopsis 2 (TAIR:AT3G58040.1); Has 1924 Blast hits to 1907 proteins in 703 species: Archae - 0; Bacteria - 0; Metazoa - 1315; Fungi - 12; Plants - 485; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | 2 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR09G38440 | No description available. | A09 | + | View |
BR04G25150 | No description available. | A04 | - | View |
BR04G02440 | No description available. | A04 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00085G00500 | No description available. | supercontig_85 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_005G23510 | No description available. | scaffold_5 | + | View |
CRU_004G23460 | No description available. | scaffold_4 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00018G02000 | No description available. | scaffold00018 | - | View |
Eucalyptus grandis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
EG0001G20780 | No description available. | scaffold_1 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM19G33170 | No description available. | Gm19 | + | View |
GM03G30250 | No description available. | Gm03 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD12G005060 | No description available. | 12 | - | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT1G054335 | ubiquitin ligase SINAT3 | chr1 | + | View |
MT7G093600 | ubiquitin ligase SINAT3 | chr7 | + | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_007G09400 | No description available. | scaffold_7 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT03G19860 | No description available. | Chr03 | - | View |
PT06G19410 | No description available. | Chr06 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST10G022310 | no data | chr10 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G17640 | No description available. | scaffold_5 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP5G04680 | similar to AT3G58040|SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) | ch5-1 | - | View |
TP4G24250 | similar to AT2G41980|seven in absentia (SINA) family protein | ch4-6 | - | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV08G09000 | name=GSVIVG01033473001; | chr8 | + | View |