Anchorpoints

Gene id
GR12G08260
Organism
Gossypium raimondii

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G13710No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G13960SU(VAR)3-9 homolog 4 SU(VAR)3-9 homolog 4 (SUVH4); FUNCTIONS IN: double-stranded methylated DNA binding, methyl-CpNpG binding, methyl-CpG binding, histone methyltransferase activity (H3-K9 specific), methyl-CpNpN binding; INVOLVED IN: maintenance of DNA methylation, histone methylation, peptidyl-lysine methylation, histone H3-K9 methylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G05650No description available.A03+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00070G00680No description available.supercontig_70+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV6G51900Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 (Su(var)3-9 homolog protein 4) (putative)LG6-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM16G05208No description available.Gm16+View
GM19G27690No description available.Gm19-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G000310No description available.9+View
MD17G000190No description available.17+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05432G00280No description available.scaffold05432-View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT7G084090histone-lysine N-methyltransferase C suvh proteinchr7-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G29020No description available.scaffold_3-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G094520Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY)%3B contains Interpro domain(s) IPR003105 SRA-YDGch02-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G30040similar to AT5G13960|SUVH4 (SU(VAR)3-9 HOMOLOG 4)ch6-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV14G13670name=GSVIVG01032986001;chr14+View


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Gene id
Species
Description
Chromosome
Strand