Anchorpoints
- Gene id
- GM17G03300
- Organism
- Glycine max
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM02G01910 | No description available. | Gm02 | - | View |
GM09G04560 | No description available. | Gm09 | - | View |
GM07G37320 | No description available. | Gm07 | - | View |
GM19G40100 | No description available. | Gm19 | + | View |
GM03G37480 | No description available. | Gm03 | + | View |
GM15G15690 | No description available. | Gm15 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL8G12890 | No description available. | scaffold_8 | + | View |
AL3G07080 | No description available. | scaffold_3 | - | View |
AL3G18100 | No description available. | scaffold_3 | + | View |
Arabidopsis thaliana
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT3G06770 | Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.2); Has 3304 Blast hits to 3296 proteins in 440 species: Archae - 6; Bacteria - 1354; Metazoa - 7; Fungi - 623; Plants - 1207; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink). Pectin lyase-like superfamily protein | 3 | - | View |
AT5G49215 | Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 5 | + | View |
AT3G16850 | Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). Pectin lyase-like superfamily protein | 3 | + | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR05G26580 | No description available. | A05 | - | View |
BR06G31270 | No description available. | A06 | + | View |
BR03G30610 | No description available. | A03 | - | View |
BR02G35270 | No description available. | A02 | + | View |
Beta vulgaris
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BV3G08700 | No description available. | Bvchr3.sca001 | - | View |
Citrullus lanatus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CL05G07110 | No description available. | Chr5 | + | View |
Cucumis melo
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CM00006G07960 | No description available. | CM3.5_scaffold00006 | + | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00009G01090 | No description available. | supercontig_9 | - | View |
CP00151G00380 | No description available. | supercontig_151 | + | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_003G15790 | No description available. | scaffold_3 | + | View |
CRU_003G06050 | No description available. | scaffold_3 | - | View |
CRU_008G08890 | No description available. | scaffold_8 | + | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00016G00740 | No description available. | scaffold00016 | + | View |
Fragaria vesca
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
FV4G14090 | Probable polygalacturonase (PG) | LG4 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR06G26010 | No description available. | Chr06 | - | View |
GR06G07740 | No description available. | Chr06 | + | View |
GR11G19420 | No description available. | Chr11 | + | View |
Lotus japonicus
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
LJ6G018790 | No description available. | chr6 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD13G014760 | No description available. | 13 | - | View |
MD16G011730 | No description available. | 16 | - | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME01945G00470 | No description available. | scaffold01945 | - | View |
ME01551G03930 | No description available. | scaffold01551 | + | View |
Medicago truncatula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MT4G120730 | polygalacturonase/glycoside hydrolase family protein | chr4 | + | View |
MT2G435340 | polygalacturonase/glycoside hydrolase family protein | chr2 | - | View |
Oryza sativa ssp. japonica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
OS11G43750 | polygalacturonase, putative, expressed | 11 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_008G27750 | No description available. | scaffold_8 | + | View |
PPE_001G12110 | No description available. | scaffold_1 | - | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT10G00550 | No description available. | Chr10 | + | View |
PT08G21150 | No description available. | Chr08 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC29726G02140 | No description available. | 29726 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL09G075460 | Polygalacturonase-like protein-like (AHRD V1 ***- Q2XTD7_SOLTU)%3B contains Interpro domain(s) IPR012334 Pectin lyase fold | ch09 | + | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST09G023000 | Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 ***- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold | chr09 | + | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0004G29230 | No description available. | scaffold_4 | + | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP3G15090 | similar to AT3G16850|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | ch3-1 | + | View |
TP3G05740 | similar to AT3G06770|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | ch3-1 | - | View |
TP2G19590 | similar to AT5G49215|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | ch2-4 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV07G08760 | name=GSVIVG01028057001; | chr7 | + | View |
VV05G12280 | name=GSVIVG01035089001; | chr5 | - | View |