Anchorpoints

Gene id
GM17G03300
Organism
Glycine max

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
GM02G01910No description available.Gm02-View
GM09G04560No description available.Gm09-View
GM07G37320No description available.Gm07-View
GM19G40100No description available.Gm19+View
GM03G37480No description available.Gm03+View
GM15G15690No description available.Gm15-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL8G12890No description available.scaffold_8+View
AL3G07080No description available.scaffold_3-View
AL3G18100No description available.scaffold_3+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G06770Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.2); Has 3304 Blast hits to 3296 proteins in 440 species: Archae - 6; Bacteria - 1354; Metazoa - 7; Fungi - 623; Plants - 1207; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink). Pectin lyase-like superfamily protein3-View
AT5G49215Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5+View
AT3G16850Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). Pectin lyase-like superfamily protein3+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR05G26580No description available.A05-View
BR06G31270No description available.A06+View
BR03G30610No description available.A03-View
BR02G35270No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV3G08700No description available.Bvchr3.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL05G07110No description available.Chr5+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00006G07960No description available.CM3.5_scaffold00006+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00009G01090No description available.supercontig_9-View
CP00151G00380No description available.supercontig_151+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_003G15790No description available.scaffold_3+View
CRU_003G06050No description available.scaffold_3-View
CRU_008G08890No description available.scaffold_8+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00016G00740No description available.scaffold00016+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV4G14090Probable polygalacturonase (PG)LG4+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G26010No description available.Chr06-View
GR06G07740No description available.Chr06+View
GR11G19420No description available.Chr11+View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G018790No description available.chr6+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD13G014760No description available.13-View
MD16G011730No description available.16-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME01945G00470No description available.scaffold01945-View
ME01551G03930No description available.scaffold01551+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G120730polygalacturonase/glycoside hydrolase family proteinchr4+View
MT2G435340polygalacturonase/glycoside hydrolase family proteinchr2-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS11G43750polygalacturonase, putative, expressed11-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G27750No description available.scaffold_8+View
PPE_001G12110No description available.scaffold_1-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT10G00550No description available.Chr10+View
PT08G21150No description available.Chr08-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29726G02140No description available.29726+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL09G075460Polygalacturonase-like protein-like (AHRD V1 ***- Q2XTD7_SOLTU)%3B contains Interpro domain(s) IPR012334 Pectin lyase foldch09+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST09G023000Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 ***- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase foldchr09+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0004G29230No description available.scaffold_4+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP3G15090similar to AT3G16850|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinch3-1+View
TP3G05740similar to AT3G06770|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinch3-1-View
TP2G19590similar to AT5G49215|glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinch2-4+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV07G08760name=GSVIVG01028057001;chr7+View
VV05G12280name=GSVIVG01035089001;chr5-View


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Gene id
Species
Description
Chromosome
Strand