Anchorpoints

Gene id
CRU_006G28830
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CRU_004G27990No description available.scaffold_4-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G33640No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G11110SPA1-related 2 (SPA2); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA (suppressor of phyA-105) protein family (TAIR:AT2G46340.1); Has 34047 Blast hits to 20982 proteins in 883 species: Archae - 38; Bacteria - 5461; Metazoa - 12841; Fungi - 7307; Plants - 4015; Viruses - 10; Other Eukaryotes - 4375 (source: NCBI BLink). SPA1-related 2 Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.4+View
AT2G46340Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. SUPPRESSOR OF PHYA-105 1 (SPA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA1-related 2 (TAIR:AT4G11110.1); Has 31438 Blast hits to 19748 proteins in 684 species: Archae - 32; Bacteria - 4770; Metazoa - 12431; Fungi - 6743; Plants - 3442; Viruses - 2; Other Eukaryotes - 4018 (source: NCBI BLink). SPA (suppressor of phyA-105) protein family2-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR08G10220No description available.A08-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV1G05530No description available.Bvchr1.sca001+View
BV5G06430No description available.Bvchr5.sca002+View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G01880No description available.Chr1+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00005G07150No description available.CM3.5_scaffold00005-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00009G01930No description available.scaffold00009-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0005G00680No description available.scaffold_5+View
EG0004G14210No description available.scaffold_4+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G04600Protein SPA1-RELATED 2 (similar to)LG5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM01G43360No description available.Gm01-View
GM11G02110No description available.Gm11+View
GM05G37070No description available.Gm05+View
GM08G02490No description available.Gm08-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G10630No description available.Chr07-View
GR08G25260No description available.Chr08-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ2G036330No description available.chr2-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD14G010030No description available.14+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_005G12330No description available.scaffold_5-View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT03G13710No description available.Chr03-View
PT01G09450No description available.Chr01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30190G05070No description available.30190-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL12G005950WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN)%3B contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat%2C regionch12-View
SL08G081990WD-40 repeat (AHRD V1 *--- Q3M9A6_ANAVT)%3B contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat%2C regionch08-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST08G028390WD-repeat protein (AHRD V1 *--- Q7ND80_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, regionchr08+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0003G28790No description available.scaffold_3-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G06310similar to AT4G11110|SPA2 (SPA1-RELATED 2)ch6-1-View
TP4G28380similar to AT2G46340|SPA1 (SUPPRESSOR OF PHYA-105 1)ch4-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV02G04300name=GSVIVG01019492001;chr2-View


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Description
Chromosome
Strand