Anchorpoints

Gene id
CRU_005G19260
Organism
Capsella rubella

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL5G23950No description available.scaffold_5-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G53920RNApolymerase sigma-subunit C Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. RNApolymerase sigma-subunit C (SIGC); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 22698 Blast hits to 22688 proteins in 2768 species: Archae - 0; Bacteria - 16386; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 4; Other Eukaryotes - 6035 (source: NCBI BLink).3-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR04G05080No description available.A04+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP5G08490similar to AT3G53920|SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)ch5-1+View


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Gene id
Species
Description
Chromosome
Strand